SMTL ID : 6kpf.1

Cryo-EM structure of a class A GPCR with G protein complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x E3R: 7-[(6aR,9R,10aR)-1-Hydroxy-9-(hydroxymethyl)-6,6-dimethyl-6a,7,8,9,10,10a-hexahydro-6H-benzo[c]chromen-3-yl]- 7-methyloctanenitrile(Non-covalent)

E3R.1: 20 residues within 4Å: Chain D: Y.25, F.87, S.90, F.91, F.94, H.95, I.110, V.113, T.114, F.117, F.183, P.184, I.186, L.191, W.194, W.258, V.261, F.281, S.285, C.288 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:F.91, D:F.91, D:F.94, D:V.113, D:T.114, D:F.117, D:F.183, D:F.183, D:P.184, D:W.194, D:W.194, D:W.258, D:V.261 Hydrogen bonds: D:S.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hua, T. et al., Activation and Signaling Mechanism Revealed by Cannabinoid Receptor-GiComplex Structures. Cell (2020)

Release Date

2020-02-12

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Cannabinoid receptor 2: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
R

E
S

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Cannabinoid receptor 2

scFv16

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