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SMTL ID : 8qs8.1

Ternary structure of 14-3-3s, C-RAF phosphopeptide (pS259) and compound 78 (1084378)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1:	4 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: K.14 Ligand excluded by PLIP
CL.5:	4 residues within 4Å: Chain A: K.14 Chain C: E.88, Y.89, K.92 Ligand excluded by PLIP

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2:	1 residues within 4Å: Chain A: E.94 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.94, H₂O.2
MG.3:	3 residues within 4Å: Chain A: E.7, R.8, K.37 No protein-ligand interaction detected (PLIP)
MG.6:	1 residues within 4Å: Chain C: E.94 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.94, H₂O.8
MG.7:	3 residues within 4Å: Chain C: E.7, R.8, K.37 No protein-ligand interaction detected (PLIP)

2 x WQN: 1-[8-(4-bromophenyl)sulfonyl-5-oxa-2,8-diazaspiro[3.5]nonan-2-yl]-2-chloranyl-ethanone(Covalent)

WQN.4:	14 residues within 4Å: Chain A: C.43, R.46, N.47, S.50, E.120, F.124, K.127, P.172, I.173, D.220, I.224 Chain B: T.6, P.7, V.9 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:P.172, A:I.224, B:T.6, B:V.9 Hydrogen bonds: A:R.46 Water bridges: A:S.50, A:K.127, A:D.131
WQN.8:	14 residues within 4Å: Chain C: C.43, R.46, N.47, S.50, E.120, F.124, K.127, P.172, I.173, D.220, I.224 Chain D: T.6, P.7, V.9 7 PLIP interactions: 2 interactions with chain D, 5 interactions with chain C Hydrophobic interactions: D:T.6, D:V.9, C:P.172, C:I.224 Hydrogen bonds: C:R.46 Water bridges: C:S.50, C:K.127

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Konstantinidou, M. et al., Small molecule stabilization of the 14-3-3sigma/CRAF complex inhibits the MAPK pathway. To Be Published

Release Date

2025-04-23

Peptides

14-3-3 protein sigma: AC
C-RAF peptide: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
P

D
P

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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

C-RAF peptide

Toggle Identical (BD)

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