SMTL ID : 8v6u.1

5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x YEQ: 4-{(3R)-1-[(1R)-1-(pyrimidin-2-yl)ethyl]piperidin-3-yl}phenol(Non-covalent)

YEQ.1: 8 residues within 4Å: Chain A: D.90, S.94, L.163, G.173, S.177, F.275, V.301, Y.305 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.163 Hydrogen bonds: A:G.173, A:S.177 Salt bridges: A:D.90 pi-Stacking: A:F.274, A:F.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyu, J. et al., AlphaFold2 structures guide prospective ligand discovery. Science (2024)

Release Date

2024-05-29

Peptides

5-hydroxytryptamine receptor 2A: A
G protein alpha-subunit q (Gi2-mini-Gq chimera): B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
single-chain variable fragment 16 (scFv16): E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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5-hydroxytryptamine receptor 2A

G protein alpha-subunit q (Gi2-mini-Gq chimera)

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

single-chain variable fragment 16 (scFv16)

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