SMTL ID : 4k4j.1

Crystal structure of human Retinoid X Receptor alpha-ligand binding domain complex with 9cUAB30 and the coactivator peptide GRIP-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 1O8: (2E,4E,6Z,8E)-8-(3,4-dihydronaphthalen-1(2H)-ylidene)-3,7-dimethylocta-2,4,6-trienoic acid(Non-covalent)

1O8.1: 14 residues within 4Å: Chain A: I.41, A.44, A.45, Q.48, L.82, F.86, R.89, L.99, A.100, I.118, F.119, C.205, L.209, F.212 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.41, A:A.44, A:A.45, A:Q.48, A:L.82, A:F.86, A:F.86, A:L.99, A:I.118, A:F.119, A:L.209, A:L.209, A:L.209, A:F.212 Hydrogen bonds: A:A.100 Water bridges: A:R.89 Salt bridges: A:R.89 1O8.2: 14 residues within 4Å: Chain C: I.41, A.44, A.45, Q.48, L.82, F.86, R.89, L.99, A.100, I.118, F.119, C.205, L.209, F.212 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:I.41, C:A.44, C:A.45, C:Q.48, C:L.82, C:F.86, C:F.86, C:L.99, C:I.118, C:F.119, C:L.209, C:L.209, C:L.209, C:F.212 Hydrogen bonds: C:A.100 Water bridges: C:R.89 Salt bridges: C:R.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boerma, L.J. et al., Defining the Communication between Agonist and Coactivator Binding in the Retinoid X Receptor alpha Ligand Binding Domain. J.Biol.Chem. (2014)

Release Date

2013-11-13

Peptides

Retinoic acid receptor RXR-alpha: AC
Nuclear receptor coactivator 2 peptide: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2 peptide

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