SMTL ID : 4k6i.1

Crystal structure of human retinoid X receptor alpha-ligand binding domain complex with Targretin and the coactivator peptide GRIP-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 9RA: 4-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphthalen-2-yl)ethenyl]benzoic acid(Non-covalent)

9RA.1: 16 residues within 4Å: Chain A: I.41, A.44, A.45, Q.48, L.82, I.83, F.86, R.89, L.99, A.100, I.118, F.119, V.122, C.205, H.208, F.212 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.41, A:I.41, A:L.82, A:I.83, A:F.86, A:F.86, A:I.118, A:F.119, A:V.122, A:H.208, A:F.212 Hydrogen bonds: A:A.100 Water bridges: A:F.86 Salt bridges: A:R.89 9RA.2: 16 residues within 4Å: Chain C: I.41, A.44, A.45, Q.48, L.82, I.83, F.86, R.89, L.99, A.100, I.118, F.119, V.122, C.205, H.208, F.212 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:I.41, C:I.41, C:L.82, C:I.83, C:F.86, C:F.86, C:I.118, C:F.119, C:V.122, C:H.208, C:F.212 Hydrogen bonds: C:A.100 Water bridges: C:F.86 Salt bridges: C:R.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boerma, L.J. et al., Defining the Communication between Agonist and Coactivator Binding in the Retinoid X Receptor alpha Ligand Binding Domain. J.Biol.Chem. (2014)

Release Date

2013-11-13

Peptides

Retinoic acid receptor RXR-alpha: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

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