- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 70 x CLA: CHLOROPHYLL A(Non-covalent)
- 4 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.3: 30 residues within 4Å:- Chain A: L.41, A.44, T.45, F.48, I.115, F.119, Y.126, Q.130, A.146, Y.147, P.150, F.158, M.172, G.175, T.179, V.205, P.279, V.283
- Chain D: L.195, A.198, L.199, A.202, I.203, W.243, F.247
- Ligands: CLA.1, SQD.12, CLA.104, LHG.110, PL9.114
17 PLIP interactions:15 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:L.41, A:A.44, A:F.48, A:I.115, A:F.119, A:A.146, A:Y.147, A:Y.147, A:P.150, A:F.158, A:V.205, A:P.279, A:V.283, D:L.195, D:A.202
- Hydrogen bonds: A:Q.130, A:Y.147
PHO.105: 33 residues within 4Å:- Chain A: F.206, A.209, L.210, M.214, F.255, L.258, I.259
- Chain D: L.27, A.31, A.34, L.35, W.38, I.104, G.108, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, A.138, P.139, F.143, F.163, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.2, PL9.11, CLA.103
24 PLIP interactions:21 interactions with chain D, 3 interactions with chain A- Hydrophobic interactions: D:A.31, D:A.34, D:L.35, D:W.38, D:W.38, D:W.38, D:I.104, D:L.112, D:F.115, D:F.115, D:A.135, D:F.136, D:A.138, D:P.139, D:F.163, D:V.165, D:P.265, D:L.269, A:F.206, A:A.209, A:L.210
- Hydrogen bonds: D:Q.119, D:N.132
- pi-Stacking: D:F.136
PHO.184: 30 residues within 4Å:- Chain T: L.41, A.44, T.45, F.48, I.115, F.119, Y.126, Q.130, A.146, Y.147, P.150, F.158, M.172, G.175, V.205, P.279, V.280, V.283
- Chain W: L.195, A.198, L.199, A.202, I.203, W.243, F.247
- Ligands: SQD.180, CLA.182, CLA.283, LHG.287, PL9.292
17 PLIP interactions:3 interactions with chain W, 14 interactions with chain T- Hydrophobic interactions: W:L.195, W:A.198, W:A.202, T:L.41, T:A.44, T:F.48, T:I.115, T:F.119, T:A.146, T:Y.147, T:Y.147, T:P.150, T:F.158, T:V.205, T:V.283
- Hydrogen bonds: T:Y.126, T:Q.130
PHO.185: 33 residues within 4Å:- Chain T: F.206, A.209, L.210, M.214, F.255, L.258, I.259
- Chain W: L.27, A.31, A.34, L.35, W.38, I.104, G.108, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, A.138, P.139, F.143, F.163, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.183, PL9.194, CLA.282
23 PLIP interactions:21 interactions with chain W, 2 interactions with chain T- Hydrophobic interactions: W:A.31, W:A.34, W:W.38, W:W.38, W:W.38, W:W.38, W:I.104, W:L.112, W:F.115, W:F.115, W:A.135, W:A.138, W:P.139, W:F.143, W:F.163, W:V.165, W:P.265, W:L.269, T:F.206, T:A.209
- Hydrogen bonds: W:Q.119, W:N.132
- pi-Stacking: W:F.136
- 20 x BCR: BETA-CAROTENE(Non-covalent)
BCR.5: 21 residues within 4Å:- Chain A: V.35, I.38, L.42, A.43, I.46, C.47, I.50, A.51, A.55, I.96, W.105, L.106, P.111
- Chain H: F.15, L.18
- Ligands: CLA.4, UNL.10, DMS.15, UNL.132, HTG.151, HTG.199
Ligand excluded by PLIPBCR.38: 14 residues within 4Å:- Chain 6: F.19
- Chain B: M.24, L.28, C.111, W.114
- Chain L: A.10, L.13
- Ligands: CLA.29, CLA.35, CLA.36, BCR.39, LMG.41, SQD.316, BCR.328
Ligand excluded by PLIPBCR.39: 19 residues within 4Å:- Chain B: L.28, G.31, W.32, S.35, I.100, V.101, S.103, G.104, L.108
- Ligands: CLA.29, CLA.33, CLA.35, BCR.38, LMG.41, SQD.180, UNL.181, SQD.316, BCR.328, UNL.329
Ligand excluded by PLIPBCR.40: 16 residues within 4Å:- Chain 6: F.18, F.22, F.23
- Chain B: L.105, L.108, A.109, W.112, V.115, Y.116
- Ligands: CLA.22, CLA.27, CLA.28, CLA.37, UNL.49, UNL.68, SQD.180
Ligand excluded by PLIPBCR.82: 17 residues within 4Å:- Chain C: F.94, V.98, I.102, S.103, V.106, L.107, F.129
- Chain J: Y.6
- Chain S: V.51, G.55, N.58, F.59
- Ligands: CLA.80, CLA.81, LMG.92, HTG.102, UNL.179
Ligand excluded by PLIPBCR.83: 19 residues within 4Å:- Chain C: I.191, F.192, Y.194, L.195, I.206, V.209, D.214, G.218, H.219, I.222, F.246
- Chain H: V.20, F.23, L.24
- Ligands: CLA.4, CLA.69, CLA.73, CLA.74, CLA.75
Ligand excluded by PLIPBCR.107: 19 residues within 4Å:- Chain D: Y.32, L.33, G.36, G.37, L.39, T.40, F.91, F.103
- Chain F: P.28, T.29, F.32, L.33, I.36
- Chain I: V.21, V.25
- Ligands: CLA.106, DGD.108, LMG.137, UNL.142
Ligand excluded by PLIPBCR.144: 25 residues within 4Å:- Chain C: F.44
- Chain I: A.14, T.15, G.18, M.19
- Chain J: L.12, L.16, I.19, L.22, F.23, A.25, F.28, V.29, A.32, F.36
- Chain Q: I.12, G.13, G.16, P.17
- Chain S: V.13, S.16, F.17
- Ligands: SQD.6, UNL.91, BCR.145
Ligand excluded by PLIPBCR.145: 18 residues within 4Å:- Chain C: A.37, G.40, L.41, V.98, L.101, S.104, A.105, G.108, A.115
- Chain J: Y.6, F.23, L.26, W.30
- Chain S: L.9, L.12, S.16
- Ligands: CLA.79, BCR.144
Ligand excluded by PLIPBCR.161: 23 residues within 4Å:- Chain A: L.28
- Chain N: I.4, F.8, A.11, I.14, A.15, F.17, F.18, I.21, F.22
- Chain U: W.32, S.35, M.36, Y.39, L.108
- Ligands: SQD.12, LHG.110, LMT.162, CLA.207, CLA.214, BCR.217, BCR.218, SQD.220
Ligand excluded by PLIPBCR.187: 20 residues within 4Å:- Chain 0: F.15
- Chain T: V.35, I.38, L.42, A.43, I.46, C.47, I.50, A.51, A.55, I.96, W.105, L.106, P.111
- Ligands: HTG.42, HTG.52, DMS.64, CLA.186, UNL.193, UNL.304
Ligand excluded by PLIPBCR.217: 14 residues within 4Å:- Chain 4: A.10, L.13
- Chain N: F.19
- Chain U: M.24, L.28, C.111, W.114
- Ligands: BCR.161, CLA.207, CLA.213, CLA.214, BCR.218, SQD.220, LMG.221
Ligand excluded by PLIPBCR.218: 17 residues within 4Å:- Chain U: L.28, G.31, W.32, S.35, I.100, V.101, S.103, G.104, L.108
- Ligands: SQD.12, UNL.13, BCR.161, UNL.163, CLA.207, CLA.211, CLA.213, BCR.217
Ligand excluded by PLIPBCR.219: 17 residues within 4Å:- Chain N: F.18, F.22, F.23
- Chain U: L.102, L.105, L.108, A.109, W.112, Y.116
- Ligands: SQD.12, CLA.205, CLA.206, CLA.215, CLA.216, UNL.227, UNL.241, UNL.242
Ligand excluded by PLIPBCR.258: 19 residues within 4Å:- Chain 0: V.20, F.23, L.24
- Chain V: I.191, F.192, Y.194, L.195, I.206, V.209, D.214, V.215, G.218, H.219, I.222, F.246
- Ligands: CLA.245, CLA.249, CLA.250, CLA.251
Ligand excluded by PLIPBCR.285: 19 residues within 4Å:- Chain 1: V.21, V.25
- Chain W: Y.32, L.33, G.36, G.37, L.39, T.40, F.91, W.94, F.103
- Chain Y: P.28, T.29, F.32, L.33, I.36
- Ligands: CLA.284, DGD.296, LMG.308
Ligand excluded by PLIPBCR.309: 24 residues within 4Å:- Chain 1: A.14, T.15, G.18, M.19
- Chain 2: L.12, L.16, I.19, L.22, F.23, A.25, F.28, V.29
- Chain 9: I.12, G.13, G.16, P.17
- Chain V: F.44
- Ligands: SQD.188, CLA.255, UNL.268, BCR.314
- Chain b: V.13, S.16, F.17
Ligand excluded by PLIPBCR.314: 20 residues within 4Å:- Chain 2: Y.6, F.9, F.23, W.30
- Chain V: A.37, G.40, L.41, F.44, V.98, L.101, I.102, S.104, A.105, G.108, A.115
- Ligands: CLA.255, BCR.309
- Chain b: L.9, S.16, V.20
Ligand excluded by PLIPBCR.315: 17 residues within 4Å:- Chain 2: Y.6
- Chain V: F.94, V.98, I.102, S.103, V.106, L.107, F.129
- Ligands: CLA.256, CLA.257, LMG.262, UNL.269, UNL.346
- Chain b: V.51, G.55, N.58, F.59
Ligand excluded by PLIPBCR.328: 22 residues within 4Å:- Chain 6: I.4, F.8, A.11, I.14, A.15, F.17, F.18, I.21, F.22
- Chain B: W.32, S.35, M.36, Y.39, L.108
- Chain T: L.28
- Ligands: CLA.29, BCR.38, BCR.39, LMT.47, SQD.180, LHG.287, SQD.316
Ligand excluded by PLIP- 8 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.6: 22 residues within 4Å:- Chain A: L.200, A.203, G.204, F.265, N.267, S.270, F.273, A.277, W.278, G.282
- Chain C: Q.10, A.16, W.18
- Chain D: F.222, R.223
- Chain I: I.22
- Chain J: F.28
- Ligands: CLA.76, UNL.91, LHG.111, LHG.122, BCR.144
16 PLIP interactions:9 interactions with chain A, 2 interactions with chain D, 3 interactions with chain C, 1 interactions with chain J, 1 interactions with chain I- Hydrophobic interactions: A:F.265, A:F.273, A:A.277, A:W.278, A:W.278, A:W.278, C:W.18, J:F.28, I:I.22
- Hydrogen bonds: A:N.267, A:S.270, A:S.270, C:Q.10
- Water bridges: D:F.222, C:W.17
- Salt bridges: D:R.223
SQD.12: 19 residues within 4Å:- Chain A: W.20, N.26, R.27, L.28, V.30, L.41, L.42
- Chain N: F.22
- Chain U: L.108, W.112, Y.116
- Chain Z: R.2
- Ligands: PHO.3, UNL.13, CLA.104, BCR.161, BCR.218, BCR.219, UNL.241
8 PLIP interactions:1 interactions with chain Z, 6 interactions with chain A, 1 interactions with chain U- Hydrogen bonds: Z:R.2, A:N.26, A:R.27, A:L.28
- Hydrophobic interactions: A:L.41, A:L.42, A:L.42, U:L.108
SQD.124: 14 residues within 4Å:- Chain D: R.14, R.16
- Chain E: E.6
- Chain F: P.13, F.15, T.16, V.17, V.20
- Chain R: L.22, T.23, V.26, I.30, D.34
- Ligands: PL9.11
9 PLIP interactions:1 interactions with chain E, 3 interactions with chain F, 3 interactions with chain R, 2 interactions with chain D- Hydrogen bonds: E:E.6, F:V.17, D:R.14
- Hydrophobic interactions: F:V.20, R:V.26, R:I.30
- Water bridges: F:R.18, R:D.34
- Salt bridges: D:R.16
SQD.180: 23 residues within 4Å:- Chain 6: F.22
- Chain B: L.108, W.112, Y.116
- Chain T: W.20, N.26, R.27, L.28, V.30, I.38, L.41, L.42, T.45
- Ligands: BCR.39, BCR.40, UNL.67, UNL.68, UNL.181, PHO.184, UNL.193, CLA.283, BCR.328, UNL.329
10 PLIP interactions:9 interactions with chain T, 1 interactions with chain B- Hydrophobic interactions: T:L.28, T:L.28, T:V.30, T:I.38, T:L.41, T:T.45, B:L.108
- Hydrogen bonds: T:N.26, T:R.27, T:L.28
SQD.188: 23 residues within 4Å:- Chain 1: I.22
- Chain 2: A.25, F.28
- Chain T: L.200, A.203, G.204, F.265, N.267, S.270, F.273, W.278, V.281, G.282
- Chain V: Q.10, A.16, W.17, W.18
- Chain W: F.222, R.223
- Ligands: CLA.252, UNL.268, LHG.288, BCR.309
16 PLIP interactions:8 interactions with chain T, 3 interactions with chain V, 3 interactions with chain 2, 1 interactions with chain W, 1 interactions with chain 1- Hydrophobic interactions: T:F.265, T:W.278, T:W.278, T:V.281, V:W.17, V:W.18, 2:A.25, 2:F.28, 2:F.28, 1:I.22
- Hydrogen bonds: T:N.267, T:S.270, T:S.270, V:Q.10
- Water bridges: T:N.267
- Salt bridges: W:R.223
SQD.220: 19 residues within 4Å:- Chain K: R.14, Y.18
- Chain L: L.16, S.19, Y.26
- Chain N: C.12, A.15, L.16, F.19, F.23
- Chain U: R.17, L.28, S.103, F.107, W.114
- Ligands: UNL.149, BCR.161, BCR.217, DMS.235
15 PLIP interactions:5 interactions with chain K, 4 interactions with chain U, 4 interactions with chain N, 2 interactions with chain L- Hydrophobic interactions: K:Y.18, U:L.28, U:F.107, N:A.15, N:L.16, N:F.19, N:F.19, L:L.16
- Hydrogen bonds: K:R.14, K:R.14, L:Y.26
- Salt bridges: K:R.14, K:R.14, U:R.17
- Water bridges: U:R.17
SQD.299: 14 residues within 4Å:- Chain W: W.11, R.14, R.16
- Chain Y: I.14, F.15, T.16, V.17, V.20
- Ligands: PL9.194, CLA.284
- Chain a: T.23, V.26, I.30, D.34
8 PLIP interactions:4 interactions with chain Y, 1 interactions with chain a, 3 interactions with chain W- Hydrophobic interactions: Y:F.15, Y:V.20, a:V.26
- Hydrogen bonds: Y:V.17, W:R.14, W:R.14
- Water bridges: Y:R.18
- Salt bridges: W:R.16
SQD.316: 19 residues within 4Å:- Chain 3: R.14, Y.18, L.21
- Chain 4: V.15, L.16
- Chain 6: C.12, F.19, F.23
- Chain B: R.17, L.28, S.103, F.107, W.114
- Chain K: R.7
- Ligands: CLA.36, BCR.38, BCR.39, UNL.147, BCR.328
15 PLIP interactions:2 interactions with chain 6, 3 interactions with chain B, 2 interactions with chain 4, 6 interactions with chain 3, 2 interactions with chain K- Hydrophobic interactions: 6:F.19, 6:F.19, B:L.28, B:F.107, 4:V.15, 4:L.16, 3:Y.18, 3:L.21
- Salt bridges: B:R.17, 3:R.14, K:R.7
- Hydrogen bonds: 3:R.14, 3:R.14, 3:Y.18
- Water bridges: K:R.7
- 10 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.7: 23 residues within 4Å:- Chain A: F.93, W.97, E.98, F.117, L.120, L.121, F.155
- Chain C: L.195, L.196, K.197, S.198, P.199, F.200, E.203, W.205, M.263, F.266
- Chain H: K.5, Y.9
- Ligands: CLA.4, DMS.16, CLA.73, DGD.84
15 PLIP interactions:5 interactions with chain A, 4 interactions with chain H, 6 interactions with chain C- Hydrophobic interactions: A:F.93, A:F.117, A:L.120, A:L.121, C:W.205, C:F.266
- Hydrogen bonds: A:W.97, H:K.5, H:K.5, H:Y.9, H:Y.9, C:E.203
- Water bridges: C:S.198, C:S.198, C:S.198
LMG.41: 19 residues within 4Å:- Chain B: Y.39, T.326, G.327, P.328, K.331, F.452, V.456
- Chain D: I.274
- Chain K: F.35
- Chain L: N.4, L.6, A.10
- Ligands: CLA.29, CLA.35, CLA.36, BCR.38, BCR.39, LMT.48, LHG.109
10 PLIP interactions:5 interactions with chain B, 3 interactions with chain L, 1 interactions with chain K, 1 interactions with chain D- Hydrophobic interactions: B:F.452, B:V.456, L:A.10, K:F.35, D:I.274
- Hydrogen bonds: B:T.326, B:T.326, L:N.4
- Water bridges: B:K.331, L:N.4
LMG.87: 17 residues within 4Å:- Chain C: F.52, H.56, Q.66
- Chain I: I.22
- Chain J: D.14, V.15, V.18, V.21, L.22, A.25
- Chain Q: Q.5, I.9
- Ligands: CLA.70, CLA.72, DGD.85, LMT.139, UNL.140
11 PLIP interactions:5 interactions with chain J, 1 interactions with chain I, 3 interactions with chain C, 2 interactions with chain Q- Hydrophobic interactions: J:V.15, J:V.18, J:V.21, J:L.22, J:A.25, I:I.22, Q:Q.5, Q:I.9
- Water bridges: C:H.56, C:H.56
- Salt bridges: C:H.56
LMG.92: 16 residues within 4Å:- Chain C: V.43, W.79, D.89, F.91, P.92, V.95, V.96, V.99, H.100, S.103
- Chain S: F.59, V.62
- Ligands: CLA.71, CLA.81, BCR.82, HTG.88
9 PLIP interactions:7 interactions with chain C, 2 interactions with chain S- Hydrophobic interactions: C:V.43, C:W.79, C:P.92, C:V.95, C:V.99, C:V.99, S:F.59
- Hydrogen bonds: C:D.89, S:V.62
LMG.137: 21 residues within 4Å:- Chain D: L.39, Y.57, G.60, C.61, N.62, F.63
- Chain F: T.29, I.36, M.39, Q.40
- Chain I: F.28, G.31, A.32, L.36, G.37
- Ligands: CLA.2, DGD.86, CLA.103, BCR.107, MG.138, UNL.142
16 PLIP interactions:8 interactions with chain D, 3 interactions with chain F, 5 interactions with chain I- Hydrophobic interactions: D:L.39, D:F.63, D:F.63, D:F.63, D:F.63, D:F.63, F:T.29, I:F.28
- Hydrogen bonds: D:F.63, F:M.39, F:Q.40, I:G.31
- Water bridges: D:N.62, I:F.28, I:L.36, I:G.37
LMG.189: 21 residues within 4Å:- Chain 0: K.5, Y.9
- Chain T: F.93, W.97, E.98, F.117, S.124, F.155
- Chain V: L.195, L.196, K.197, S.198, P.199, F.200, E.203, W.205, M.263, F.266
- Ligands: CLA.186, CLA.249, DGD.259
13 PLIP interactions:7 interactions with chain V, 4 interactions with chain 0, 2 interactions with chain T- Hydrophobic interactions: V:M.263, V:F.266, T:F.155
- Hydrogen bonds: V:E.203, V:E.203, 0:K.5, 0:K.5, 0:Y.9, T:W.97
- Water bridges: V:S.198, V:S.198, V:S.198, 0:Y.9
LMG.221: 17 residues within 4Å:- Chain 3: F.35
- Chain 4: N.4, L.6, A.10
- Chain U: Y.39, T.326, G.327, P.328, K.331, F.452, A.453
- Chain W: I.274
- Ligands: CLA.207, CLA.213, CLA.214, BCR.217, LMT.318
12 PLIP interactions:8 interactions with chain U, 1 interactions with chain W, 1 interactions with chain 4, 2 interactions with chain 3- Hydrophobic interactions: U:F.452, U:A.453, W:I.274, 3:F.35, 3:F.35
- Hydrogen bonds: U:Y.39, U:T.326, U:T.326, 4:N.4
- Water bridges: U:T.326, U:K.331, U:R.443
LMG.262: 14 residues within 4Å:- Chain V: V.43, W.79, D.89, F.91, P.92, V.95, V.96, V.99, H.100, S.103
- Ligands: CLA.247, HTG.264, BCR.315
- Chain b: F.59
7 PLIP interactions:7 interactions with chain V- Hydrophobic interactions: V:V.43, V:W.79, V:P.92, V:V.96, V:V.99
- Hydrogen bonds: V:D.89
- Water bridges: V:D.89
LMG.263: 11 residues within 4Å:- Chain 1: I.22
- Chain 2: D.14, V.18, V.21
- Chain 9: Q.5
- Chain V: F.52, H.56, Q.66
- Ligands: CLA.248, DGD.260, UNL.311
5 PLIP interactions:2 interactions with chain V, 2 interactions with chain 2, 1 interactions with chain 1- Hydrogen bonds: V:H.56
- Salt bridges: V:H.56
- Hydrophobic interactions: 2:V.21, 2:V.21, 1:I.22
LMG.308: 19 residues within 4Å:- Chain 1: F.28, G.31, A.32, L.36, G.37
- Chain W: L.39, Y.57, G.60, C.61, N.62, F.63
- Chain Y: T.29, I.36, M.39, Q.40
- Ligands: CLA.183, DGD.261, BCR.285, MG.310
12 PLIP interactions:6 interactions with chain W, 3 interactions with chain Y, 3 interactions with chain 1- Hydrophobic interactions: W:L.39, W:F.63, W:F.63, W:F.63, 1:F.28
- Hydrogen bonds: W:F.63, Y:M.39, Y:Q.40, 1:G.31
- Water bridges: W:N.62, Y:I.42, 1:G.37
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 4 residues within 4Å:- Chain A: N.181, H.332, E.333
- Chain D: K.307
Ligand excluded by PLIPCL.9: 5 residues within 4Å:- Chain A: H.337, N.338, F.339
- Chain C: G.335, E.336
Ligand excluded by PLIPCL.190: 4 residues within 4Å:- Chain T: N.181, H.332, E.333
- Chain W: K.307
Ligand excluded by PLIPCL.191: 5 residues within 4Å:- Chain T: H.337, N.338, F.339
- Chain V: G.335, E.336
Ligand excluded by PLIP- 55 x UNL: UNKNOWN LIGAND(Non-functional Binders)
UNL.10: 6 residues within 4Å:- Chain A: R.16, F.17, W.20
- Chain H: L.18
- Ligands: BCR.5, UNL.135
Ligand excluded by PLIPUNL.13: 4 residues within 4Å:- Chain A: I.50
- Ligands: SQD.12, UNL.163, BCR.218
Ligand excluded by PLIPUNL.49: 7 residues within 4Å:- Chain B: W.90, L.148
- Ligands: CLA.22, CLA.27, CLA.28, BCR.40, HTG.53
Ligand excluded by PLIPUNL.50: 3 residues within 4Å:- Chain B: F.214, V.218
- Ligands: UNL.51
Ligand excluded by PLIPUNL.51: 5 residues within 4Å:- Chain B: F.214
- Chain G: G.25, L.29
- Ligands: UNL.50, DMS.128
Ligand excluded by PLIPUNL.54: 6 residues within 4Å:- Chain B: L.147, G.151, F.155, L.160, F.161
- Ligands: CLA.28
Ligand excluded by PLIPUNL.67: 5 residues within 4Å:- Ligands: CLA.28, HTG.53, UNL.68, SQD.180, UNL.305
Ligand excluded by PLIPUNL.68: 5 residues within 4Å:- Ligands: CLA.22, CLA.28, BCR.40, UNL.67, SQD.180
Ligand excluded by PLIPUNL.91: 5 residues within 4Å:- Chain C: W.17
- Chain J: F.36
- Ligands: SQD.6, DGD.86, BCR.144
Ligand excluded by PLIPUNL.112: 15 residues within 4Å:- Chain B: A.227
- Chain D: F.5, D.9, K.13, W.22, R.124, L.125
- Chain G: L.38
- Chain R: F.24
- Ligands: CLA.30, CLA.31, LMT.46, UNL.113, HTG.119, UNL.129
Ligand excluded by PLIPUNL.113: 8 residues within 4Å:- Chain D: W.22, S.23, L.26, F.120
- Chain G: L.38
- Chain R: L.20
- Ligands: CLA.106, UNL.112
Ligand excluded by PLIPUNL.121: 4 residues within 4Å:- Chain E: P.27, F.30, W.34
- Ligands: LMT.120
Ligand excluded by PLIPUNL.129: 4 residues within 4Å:- Chain G: A.31
- Ligands: LMT.46, CLA.106, UNL.112
Ligand excluded by PLIPUNL.130: 2 residues within 4Å:- Chain G: I.9, L.13
Ligand excluded by PLIPUNL.132: 7 residues within 4Å:- Chain A: L.102
- Chain H: M.1, L.4
- Ligands: CLA.4, BCR.5, UNL.133, HTG.199
Ligand excluded by PLIPUNL.133: 5 residues within 4Å:- Chain H: M.1, T.3, L.4
- Ligands: UNL.132, HTG.200
Ligand excluded by PLIPUNL.134: 5 residues within 4Å:- Chain H: T.3, I.6, T.7, I.10
- Ligands: UNL.135
Ligand excluded by PLIPUNL.135: 4 residues within 4Å:- Chain H: T.7, V.11
- Ligands: UNL.10, UNL.134
Ligand excluded by PLIPUNL.136: 6 residues within 4Å:- Chain A: W.14
- Chain H: F.14, L.17, L.18, F.21
- Ligands: LMT.131
Ligand excluded by PLIPUNL.140: 5 residues within 4Å:- Chain I: G.26, L.27, Y.30
- Chain Q: V.2
- Ligands: LMG.87
Ligand excluded by PLIPUNL.141: 3 residues within 4Å:- Chain I: A.14, A.17
- Chain J: F.36
Ligand excluded by PLIPUNL.142: 5 residues within 4Å:- Chain I: F.29
- Ligands: DGD.85, BCR.107, LMG.137, UNL.143
Ligand excluded by PLIPUNL.143: 2 residues within 4Å:- Ligands: LMT.139, UNL.142
Ligand excluded by PLIPUNL.147: 5 residues within 4Å:- Chain 4: I.23
- Chain K: R.7
- Ligands: CLA.36, SQD.316, LMT.319
Ligand excluded by PLIPUNL.149: 5 residues within 4Å:- Chain L: I.23
- Ligands: LMT.148, CLA.214, SQD.220, DMS.235
Ligand excluded by PLIPUNL.163: 4 residues within 4Å:- Chain A: T.45
- Chain N: A.11
- Ligands: UNL.13, BCR.218
Ligand excluded by PLIPUNL.164: 7 residues within 4Å:- Chain O: N.28, P.54, Y.55, E.56, V.84, T.85, E.86
Ligand excluded by PLIPUNL.177: 8 residues within 4Å:- Chain D: L.82, W.83, G.89
- Chain R: I.11, S.15, G.16, V.19
- Ligands: CLA.106
Ligand excluded by PLIPUNL.179: 2 residues within 4Å:- Chain C: V.106
- Ligands: BCR.82
Ligand excluded by PLIPUNL.181: 6 residues within 4Å:- Chain B: L.97
- Ligands: BCR.39, HTG.52, SQD.180, LMT.197, UNL.329
Ligand excluded by PLIPUNL.193: 7 residues within 4Å:- Chain T: L.13, R.16, F.17, W.20
- Ligands: SQD.180, BCR.187, UNL.304
Ligand excluded by PLIPUNL.195: 5 residues within 4Å:- Chain 0: L.18, F.21
- Chain T: N.12, W.14
- Ligands: LMT.267
Ligand excluded by PLIPUNL.227: 6 residues within 4Å:- Chain U: W.90, L.148
- Ligands: CLA.205, CLA.206, BCR.219, UNL.242
Ligand excluded by PLIPUNL.228: 4 residues within 4Å:- Chain U: F.155, F.161
- Ligands: CLA.204, CLA.206
Ligand excluded by PLIPUNL.240: 2 residues within 4Å:- Ligands: CLA.206, UNL.241
Ligand excluded by PLIPUNL.241: 5 residues within 4Å:- Ligands: SQD.12, CLA.206, CLA.216, BCR.219, UNL.240
Ligand excluded by PLIPUNL.242: 3 residues within 4Å:- Ligands: CLA.206, BCR.219, UNL.227
Ligand excluded by PLIPUNL.243: 5 residues within 4Å:- Chain U: I.140, F.143, L.144
- Chain Z: L.13
- Ligands: CLA.215
Ligand excluded by PLIPUNL.244: 3 residues within 4Å:- Chain U: I.210, F.214, V.218
Ligand excluded by PLIPUNL.268: 5 residues within 4Å:- Chain 2: F.28, F.36
- Chain V: W.17
- Ligands: SQD.188, BCR.309
Ligand excluded by PLIPUNL.269: 4 residues within 4Å:- Chain V: F.128
- Ligands: CLA.256, CLA.257, BCR.315
Ligand excluded by PLIPUNL.270: 2 residues within 4Å:- Chain V: Y.125
- Ligands: CLA.257
Ligand excluded by PLIPUNL.289: 16 residues within 4Å:- Chain U: A.227, R.229, L.473
- Chain W: F.5, D.9, K.13, W.22
- Chain Z: A.31, M.34, G.35
- Ligands: CLA.208, CLA.209, LMT.226, HTG.281, UNL.291
- Chain a: F.24
Ligand excluded by PLIPUNL.290: 7 residues within 4Å:- Chain W: W.83, G.89
- Ligands: CLA.284
- Chain a: I.11, S.15, G.16, V.19
Ligand excluded by PLIPUNL.291: 8 residues within 4Å:- Chain W: W.22, I.25, L.26, F.120, R.124
- Ligands: CLA.284, UNL.289
- Chain a: L.20
Ligand excluded by PLIPUNL.297: 3 residues within 4Å:- Chain X: I.26, F.30
- Ligands: LMT.300
Ligand excluded by PLIPUNL.303: 4 residues within 4Å:- Chain Z: I.9, L.10, P.12
- Ligands: CLA.215
Ligand excluded by PLIPUNL.304: 5 residues within 4Å:- Chain 0: M.1
- Ligands: HTG.52, CLA.186, BCR.187, UNL.193
Ligand excluded by PLIPUNL.305: 5 residues within 4Å:- Chain 0: M.1, T.3, L.4
- Ligands: HTG.53, UNL.67
Ligand excluded by PLIPUNL.306: 2 residues within 4Å:- Chain 0: T.7, I.10
Ligand excluded by PLIPUNL.311: 5 residues within 4Å:- Chain 1: V.25, G.26, Y.33
- Ligands: DGD.260, LMG.263
Ligand excluded by PLIPUNL.313: 3 residues within 4Å:- Chain 1: L.10
- Chain 2: A.32, F.36
Ligand excluded by PLIPUNL.329: 9 residues within 4Å:- Chain 6: V.7, A.11, I.14
- Chain T: L.42, T.45
- Ligands: BCR.39, SQD.180, UNL.181, LMT.197
Ligand excluded by PLIPUNL.345: 4 residues within 4Å:- Ligands: CLA.284
- Chain a: F.10, L.14, A.17
Ligand excluded by PLIPUNL.346: 2 residues within 4Å:- Ligands: BCR.315
- Chain b: I.48
Ligand excluded by PLIP- 4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.11: 27 residues within 4Å:- Chain A: F.211, M.214, H.215, L.218, A.251, H.252, F.255, I.259, A.263, S.264, F.265, L.271, F.274
- Chain D: V.20, G.24, F.28, P.29, A.31, L.35
- Chain F: A.21, T.24, L.25
- Chain R: T.23
- Ligands: CLA.2, PHO.105, LHG.122, SQD.124
21 PLIP interactions:12 interactions with chain A, 6 interactions with chain D, 2 interactions with chain F, 1 interactions with chain R- Hydrophobic interactions: A:F.211, A:L.218, A:L.218, A:L.218, A:A.251, A:F.255, A:I.259, A:L.271, A:L.271, A:F.274, A:F.274, D:V.20, D:F.28, D:F.28, D:P.29, D:A.31, D:L.35, F:A.21, F:L.25, R:T.23
- Hydrogen bonds: A:F.265
PL9.114: 36 residues within 4Å:- Chain A: F.52, I.53, I.77, I.176
- Chain D: M.188, M.189, A.192, G.193, L.199, I.203, H.204, T.207, Y.234, M.236, A.239, N.240, W.243, F.247, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Chain K: L.23, V.26, L.29, L.30
- Chain N: F.10
- Ligands: PHO.3, CLA.29, CLA.104, LHG.110, LHG.146
30 PLIP interactions:4 interactions with chain K, 18 interactions with chain D, 5 interactions with chain A, 3 interactions with chain N- Hydrophobic interactions: K:L.23, K:V.26, K:L.29, K:L.30, D:M.188, D:M.189, D:A.192, D:L.199, D:I.203, D:T.207, D:Y.234, D:W.243, D:F.247, D:F.251, D:F.251, D:L.257, D:F.260, D:F.263, D:V.264, A:F.52, A:F.52, A:I.53, A:I.77, A:I.176, N:F.10, N:F.10, N:F.10
- Hydrogen bonds: D:T.207, D:F.251
- pi-Stacking: D:F.251
PL9.194: 31 residues within 4Å:- Chain T: F.211, M.214, H.215, L.218, I.248, A.251, H.252, F.255, I.259, A.263, S.264, F.265, L.271, F.274
- Chain W: V.18, V.20, G.24, I.25, F.28, P.29, Y.32, L.35
- Chain Y: V.17, A.21, T.24, L.25
- Ligands: CLA.183, PHO.185, CLA.282, SQD.299
- Chain a: T.23
25 PLIP interactions:6 interactions with chain W, 16 interactions with chain T, 1 interactions with chain a, 2 interactions with chain Y- Hydrophobic interactions: W:V.18, W:V.20, W:F.28, W:P.29, W:Y.32, W:L.35, T:F.211, T:M.214, T:L.218, T:L.218, T:L.218, T:I.248, T:A.251, T:F.255, T:F.255, T:F.255, T:I.259, T:F.265, T:L.271, T:L.271, T:F.274, a:T.23, Y:V.17, Y:L.25
- Hydrogen bonds: T:F.265
PL9.292: 36 residues within 4Å:- Chain 3: L.23, V.26, L.27, L.29
- Chain 6: F.10
- Chain T: F.52, I.53, I.77, I.176
- Chain W: M.188, M.189, A.192, G.193, L.199, I.203, H.204, T.207, Y.234, M.236, A.239, N.240, W.243, F.247, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Ligands: PHO.184, CLA.207, CLA.283, LHG.287, LHG.317
30 PLIP interactions:5 interactions with chain T, 19 interactions with chain W, 3 interactions with chain 3, 3 interactions with chain 6- Hydrophobic interactions: T:F.52, T:F.52, T:I.53, T:I.77, T:I.176, W:M.188, W:M.189, W:A.192, W:L.199, W:I.203, W:T.207, W:Y.234, W:A.239, W:W.243, W:F.247, W:F.251, W:F.251, W:F.251, W:L.257, W:F.260, W:F.263, W:V.264, 3:L.23, 3:L.27, 3:L.29, 6:F.10, 6:F.10, 6:F.10
- Hydrogen bonds: W:H.204, W:F.251
- 95 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.14: 4 residues within 4Å:- Chain A: P.57, P.66
- Chain D: E.300
- Chain M: R.113
Ligand excluded by PLIPDMS.15: 7 residues within 4Å:- Chain A: L.102, D.103
- Chain U: W.74, S.75
- Ligands: BCR.5, HTG.151, HTG.199
Ligand excluded by PLIPDMS.16: 6 residues within 4Å:- Chain A: W.97
- Chain H: M.1, E.2, K.5
- Ligands: LMG.7, DMS.17
Ligand excluded by PLIPDMS.17: 3 residues within 4Å:- Chain A: E.98, A.100
- Ligands: DMS.16
Ligand excluded by PLIPDMS.18: 7 residues within 4Å:- Chain A: N.315
- Chain D: H.51, G.52, L.53, Q.322, P.325
- Chain E: I.62
Ligand excluded by PLIPDMS.55: 6 residues within 4Å:- Chain B: W.274, D.275, S.277, R.357, M.358, P.359
Ligand excluded by PLIPDMS.56: 3 residues within 4Å:- Chain B: Y.389
- Chain D: V.330
- Ligands: DMS.115
Ligand excluded by PLIPDMS.57: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPDMS.58: 5 residues within 4Å:- Chain B: N.347, K.348, E.349, Q.393, Q.394
Ligand excluded by PLIPDMS.59: 3 residues within 4Å:- Chain B: E.386
- Chain O: I.36
- Chain P: S.51
Ligand excluded by PLIPDMS.60: 4 residues within 4Å:- Chain B: P.49, T.80, L.173, K.307
Ligand excluded by PLIPDMS.61: 6 residues within 4Å:- Chain B: V.115, Y.116, W.117, D.118
- Chain K: M.1, E.2
Ligand excluded by PLIPDMS.62: 4 residues within 4Å:- Chain B: S.302, A.303, I.304, P.305
Ligand excluded by PLIPDMS.63: 6 residues within 4Å:- Chain B: T.71, S.78, T.80, E.82, S.176, V.177
Ligand excluded by PLIPDMS.64: 7 residues within 4Å:- Chain B: W.74, S.75
- Chain T: L.102, D.103
- Ligands: HTG.42, HTG.52, BCR.187
Ligand excluded by PLIPDMS.65: 3 residues within 4Å:- Chain B: Q.408, T.409, F.410
Ligand excluded by PLIPDMS.66: 5 residues within 4Å:- Chain B: I.12, N.13, P.130, A.131, L.132
Ligand excluded by PLIPDMS.93: 4 residues within 4Å:- Chain C: R.373, E.376
- Chain P: F.101
- Ligands: DMS.94
Ligand excluded by PLIPDMS.94: 8 residues within 4Å:- Chain C: Y.64, G.84, G.85, E.86, E.282
- Chain P: P.102
- Ligands: DMS.93, DMS.95
Ligand excluded by PLIPDMS.95: 6 residues within 4Å:- Chain C: E.86
- Chain P: D.99, I.100, P.102, R.105
- Ligands: DMS.94
Ligand excluded by PLIPDMS.96: 4 residues within 4Å:- Chain C: W.171, N.210, R.344
- Chain M: D.6
Ligand excluded by PLIPDMS.97: 3 residues within 4Å:- Chain C: G.174, W.369, R.373
Ligand excluded by PLIPDMS.98: 4 residues within 4Å:- Chain C: G.202, D.342, R.344
- Chain M: Y.5
Ligand excluded by PLIPDMS.99: 4 residues within 4Å:- Chain C: W.171, P.346, E.349, P.350
Ligand excluded by PLIPDMS.100: 9 residues within 4Å:- Chain A: L.341, L.343
- Chain C: M.378, T.379, A.381, G.391, V.392, E.395
- Chain P: K.47
Ligand excluded by PLIPDMS.101: 3 residues within 4Å:- Chain C: V.87, V.88, T.90
Ligand excluded by PLIPDMS.115: 5 residues within 4Å:- Chain D: F.331, P.332
- Chain P: V.135, Y.136
- Ligands: DMS.56
Ligand excluded by PLIPDMS.116: 6 residues within 4Å:- Chain B: W.467, A.470, R.471, F.474
- Chain D: P.130, I.134
Ligand excluded by PLIPDMS.117: 4 residues within 4Å:- Chain D: I.293, E.297
- Chain M: L.172, L.180
Ligand excluded by PLIPDMS.118: 6 residues within 4Å:- Chain A: I.224, E.244, Y.246, N.247
- Chain D: Q.229, A.230
Ligand excluded by PLIPDMS.125: 4 residues within 4Å:- Chain F: R.44
- Chain P: L.3, E.23, L.27
Ligand excluded by PLIPDMS.128: 5 residues within 4Å:- Chain G: G.25, T.26, P.28, L.29
- Ligands: UNL.51
Ligand excluded by PLIPDMS.152: 3 residues within 4Å:- Chain M: S.32, V.85, S.87
Ligand excluded by PLIPDMS.153: 6 residues within 4Å:- Chain M: N.122, V.124, E.143, F.144, N.145, K.192
Ligand excluded by PLIPDMS.154: 7 residues within 4Å:- Chain M: R.182, R.187, D.221, G.224, H.226, E.227, P.228
Ligand excluded by PLIPDMS.155: 6 residues within 4Å:- Chain M: Q.194, I.195, S.196, E.214, S.215, E.216
Ligand excluded by PLIPDMS.156: 6 residues within 4Å:- Chain M: Y.28, T.206, G.207, I.241, E.242, P.243
Ligand excluded by PLIPDMS.157: 2 residues within 4Å:- Chain M: P.18, R.40
Ligand excluded by PLIPDMS.158: 4 residues within 4Å:- Chain M: P.45, T.46, F.48, L.68
Ligand excluded by PLIPDMS.159: 5 residues within 4Å:- Chain M: S.126, T.127, Q.128, D.139, K.141
Ligand excluded by PLIPDMS.160: 3 residues within 4Å:- Chain M: F.188, S.189, L.190
Ligand excluded by PLIPDMS.165: 4 residues within 4Å:- Chain O: V.50, A.53, R.97, Y.98
Ligand excluded by PLIPDMS.166: 6 residues within 4Å:- Chain B: A.385, E.386, S.387, Q.393
- Chain O: Y.21, G.22
Ligand excluded by PLIPDMS.167: 4 residues within 4Å:- Chain M: R.187
- Chain O: E.8, L.9, V.10
Ligand excluded by PLIPDMS.171: 3 residues within 4Å:- Chain P: G.127, D.128
- Ligands: DMS.175
Ligand excluded by PLIPDMS.172: 4 residues within 4Å:- Chain D: E.333
- Chain P: R.55, D.128, Y.136
Ligand excluded by PLIPDMS.173: 4 residues within 4Å:- Chain P: E.2, L.3, T.4, P.5
Ligand excluded by PLIPDMS.174: 5 residues within 4Å:- Chain P: R.31, L.32, Y.35, N.106, L.107
Ligand excluded by PLIPDMS.175: 7 residues within 4Å:- Chain A: K.310
- Chain E: R.60
- Chain P: P.123, K.124, I.125, G.127
- Ligands: DMS.171
Ligand excluded by PLIPDMS.176: 5 residues within 4Å:- Chain P: P.11, N.13, S.14, D.67, N.68
Ligand excluded by PLIPDMS.229: 6 residues within 4Å:- Chain U: W.274, D.275, S.277, R.357, M.358, P.359
Ligand excluded by PLIPDMS.230: 6 residues within 4Å:- Chain U: I.12, N.13, P.130, A.131, L.132, I.233
Ligand excluded by PLIPDMS.231: 8 residues within 4Å:- Chain 7: L.17, Y.21, G.22
- Chain U: R.384, A.385, E.386, S.387, Q.393
Ligand excluded by PLIPDMS.232: 5 residues within 4Å:- Chain U: T.409, F.410, T.411, D.412
- Ligands: DMS.238
Ligand excluded by PLIPDMS.233: 4 residues within 4Å:- Chain U: S.302, A.303, I.304, P.305
Ligand excluded by PLIPDMS.234: 7 residues within 4Å:- Chain U: L.41, A.42, T.43, F.44
- Ligands: HTG.151, LMT.162, LMT.225
Ligand excluded by PLIPDMS.235: 4 residues within 4Å:- Ligands: LMT.148, UNL.149, CLA.214, SQD.220
Ligand excluded by PLIPDMS.236: 4 residues within 4Å:- Chain U: F.354, T.370, D.371, K.372
Ligand excluded by PLIPDMS.237: 5 residues within 4Å:- Chain U: N.347, K.348, E.349, Q.393, Q.394
Ligand excluded by PLIPDMS.238: 4 residues within 4Å:- Chain U: Q.408, T.409, F.410
- Ligands: DMS.232
Ligand excluded by PLIPDMS.239: 2 residues within 4Å:- Chain M: E.52
- Chain U: G.81
Ligand excluded by PLIPDMS.271: 4 residues within 4Å:- Chain 5: D.6
- Chain V: W.171, N.210, R.344
Ligand excluded by PLIPDMS.272: 6 residues within 4Å:- Chain V: Y.64, G.84, G.85, E.86, E.282
- Ligands: DMS.335
Ligand excluded by PLIPDMS.273: 4 residues within 4Å:- Chain V: E.123, E.124, S.126, S.127
Ligand excluded by PLIPDMS.274: 4 residues within 4Å:- Chain 5: Y.5
- Chain V: G.202, D.342, R.344
Ligand excluded by PLIPDMS.275: 6 residues within 4Å:- Chain 8: D.99, P.102, R.105
- Chain V: P.83, G.84, E.86
Ligand excluded by PLIPDMS.276: 3 residues within 4Å:- Chain V: G.174, G.175, W.369
Ligand excluded by PLIPDMS.277: 3 residues within 4Å:- Chain V: D.132, K.134, D.135
Ligand excluded by PLIPDMS.278: 2 residues within 4Å:- Chain V: D.177, V.178
Ligand excluded by PLIPDMS.279: 6 residues within 4Å:- Chain V: K.30, I.116, R.117, G.118, P.119, E.120
Ligand excluded by PLIPDMS.280: 9 residues within 4Å:- Chain 8: K.47
- Chain T: L.341, L.343
- Chain V: M.378, T.379, A.381, G.391, V.392, E.395
Ligand excluded by PLIPDMS.293: 6 residues within 4Å:- Chain 8: V.135, Y.136
- Chain W: V.330, F.331, P.332, E.333
Ligand excluded by PLIPDMS.294: 8 residues within 4Å:- Chain U: W.467, A.470, R.471, F.474, F.478
- Chain W: P.130, Y.131, I.134
Ligand excluded by PLIPDMS.295: 3 residues within 4Å:- Chain W: Q.214, G.216, E.217
Ligand excluded by PLIPDMS.302: 8 residues within 4Å:- Chain U: D.187, N.190, Y.192, N.193
- Chain Z: N.58, S.60, W.61, K.62
Ligand excluded by PLIPDMS.307: 9 residues within 4Å:- Chain 0: P.28, A.29, R.34, K.35, D.36
- Chain T: Y.135
- Chain V: I.247, A.434, A.435
Ligand excluded by PLIPDMS.312: 2 residues within 4Å:- Chain 1: P.9, W.11
Ligand excluded by PLIPDMS.321: 4 residues within 4Å:- Chain 5: R.113
- Chain T: P.57, P.66
- Chain W: E.300
Ligand excluded by PLIPDMS.322: 4 residues within 4Å:- Chain 5: E.178, E.179, A.181, R.182
Ligand excluded by PLIPDMS.323: 4 residues within 4Å:- Chain 5: Y.28, R.205, T.206, P.243
Ligand excluded by PLIPDMS.324: 6 residues within 4Å:- Chain 5: G.110, G.111, E.112
- Chain T: Y.73
- Ligands: HTG.42, LMT.197
Ligand excluded by PLIPDMS.325: 7 residues within 4Å:- Chain 5: V.50, K.51, E.52, E.53, M.108, E.112, H.229
Ligand excluded by PLIPDMS.326: 4 residues within 4Å:- Chain 5: P.45, T.46, F.48, L.68
Ligand excluded by PLIPDMS.327: 4 residues within 4Å:- Chain 5: E.52, E.62
- Chain B: G.81, T.83
Ligand excluded by PLIPDMS.331: 4 residues within 4Å:- Chain 7: V.50, K.51, A.53, R.97
Ligand excluded by PLIPDMS.332: 6 residues within 4Å:- Chain 7: P.54, Y.55, E.56, S.57, D.60
- Ligands: HTG.330
Ligand excluded by PLIPDMS.333: 3 residues within 4Å:- Chain 5: N.122
- Chain 7: V.92, E.93
Ligand excluded by PLIPDMS.335: 6 residues within 4Å:- Chain 8: I.100, F.101, P.102
- Chain V: R.372, E.376
- Ligands: DMS.272
Ligand excluded by PLIPDMS.336: 3 residues within 4Å:- Chain 8: P.11, N.13, D.67
Ligand excluded by PLIPDMS.337: 4 residues within 4Å:- Chain 8: L.3, E.23, L.27
- Chain Y: R.44
Ligand excluded by PLIPDMS.338: 5 residues within 4Å:- Chain 8: E.2, L.3, T.4, P.5
- Ligands: DMS.340
Ligand excluded by PLIPDMS.339: 7 residues within 4Å:- Chain 8: E.87, I.88, E.90, V.91
- Chain V: K.305, P.368, E.371
Ligand excluded by PLIPDMS.340: 3 residues within 4Å:- Chain 8: E.2
- Chain Y: R.44
- Ligands: DMS.338
Ligand excluded by PLIPDMS.341: 8 residues within 4Å:- Chain 8: K.124, I.125, L.126, G.127
- Chain T: K.310
- Chain X: E.58, R.60
- Ligands: DMS.342
Ligand excluded by PLIPDMS.342: 3 residues within 4Å:- Chain 8: G.127, D.128
- Ligands: DMS.341
Ligand excluded by PLIP- 2 x FE2: FE (II) ION(Non-covalent)
FE2.19: 5 residues within 4Å:- Chain A: H.215, H.272
- Chain D: H.204, H.258
- Ligands: BCT.21
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain A- Metal complexes: D:H.204, D:H.258, A:H.215, A:H.272
FE2.196: 5 residues within 4Å:- Chain T: H.215, H.272
- Chain W: H.204, H.258
- Ligands: BCT.192
4 PLIP interactions:2 interactions with chain T, 2 interactions with chain W- Metal complexes: T:H.215, T:H.272, W:H.204, W:H.258
- 2 x OEX: CA-MN4-O5 CLUSTER(Covalent)
OEX.20: 11 residues within 4Å:- Chain A: D.61, D.170, V.185, E.189, H.332, E.333, H.337, D.342, A.344
- Chain C: E.336, R.339
18 PLIP interactions:10 interactions with chain A, 4 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: A:D.170, A:D.170, A:E.189, A:E.189, A:H.332, A:E.333, A:E.333, A:D.342, A:D.342, A:A.344, C:E.336, C:E.336, H2O.2, H2O.2, H2O.4, H2O.5
- Hydrogen bonds: C:R.339, C:R.339
OEX.198: 10 residues within 4Å:- Chain T: D.61, D.170, E.189, H.332, E.333, H.337, D.342, A.344
- Chain V: E.336, R.339
18 PLIP interactions:10 interactions with chain T, 4 interactions with chain V, 4 Ligand-Water interactions- Metal complexes: T:D.170, T:D.170, T:E.189, T:E.189, T:H.332, T:E.333, T:E.333, T:D.342, T:D.342, T:A.344, V:E.336, V:E.336, H2O.78, H2O.78, H2O.78, H2O.81
- Hydrogen bonds: V:R.339, V:R.339
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.21: 10 residues within 4Å:- Chain A: H.215, V.219, E.244, Y.246, H.272
- Chain D: H.204, Y.234, K.254, H.258
- Ligands: FE2.19
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: D:K.254, A:Y.246
- Water bridges: A:E.244
BCT.192: 9 residues within 4Å:- Chain T: H.215, V.219, E.244, Y.246, H.272
- Chain W: H.204, Y.234, H.258
- Ligands: FE2.196
1 PLIP interactions:1 interactions with chain W- Hydrogen bonds: W:Y.234
- 21 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
HTG.42: 13 residues within 4Å:- Chain 5: G.110, G.111
- Chain B: L.38, L.41, S.73, S.75, W.77, E.93
- Chain T: Y.73
- Ligands: DMS.64, BCR.187, LMT.197, DMS.324
Ligand excluded by PLIPHTG.43: 12 residues within 4Å:- Chain B: K.340, S.418, Y.419, K.422, F.429, E.430, F.431, T.433
- Chain M: Q.174, A.175, K.176, E.177
Ligand excluded by PLIPHTG.44: 2 residues within 4Å:- Chain B: W.184
- Ligands: CLA.23
Ligand excluded by PLIPHTG.52: 14 residues within 4Å:- Chain 5: K.67
- Chain B: W.74, D.86, P.87, G.88, F.89, L.97
- Chain T: I.50, L.102
- Ligands: HTG.53, DMS.64, UNL.181, BCR.187, UNL.304
Ligand excluded by PLIPHTG.53: 8 residues within 4Å:- Chain B: G.88, F.89, W.90
- Ligands: CLA.28, UNL.49, HTG.52, UNL.67, UNL.305
Ligand excluded by PLIPHTG.88: 5 residues within 4Å:- Chain C: W.79, F.164, G.165
- Ligands: CLA.70, LMG.92
Ligand excluded by PLIPHTG.89: 8 residues within 4Å:- Chain C: L.155, V.158, F.163, T.182, N.183, P.184, L.186, I.220
Ligand excluded by PLIPHTG.90: 4 residues within 4Å:- Chain C: D.187, P.188, W.221, L.224
Ligand excluded by PLIPHTG.102: 3 residues within 4Å:- Chain C: Y.125
- Ligands: CLA.81, BCR.82
Ligand excluded by PLIPHTG.119: 5 residues within 4Å:- Chain D: R.2, G.3, W.4
- Chain G: W.24
- Ligands: UNL.112
Ligand excluded by PLIPHTG.151: 13 residues within 4Å:- Chain A: Y.73
- Chain M: G.110, G.111
- Chain U: L.41, S.73, S.75, W.77, E.93, L.97
- Ligands: BCR.5, DMS.15, LMT.225, DMS.234
Ligand excluded by PLIPHTG.169: 6 residues within 4Å:- Chain P: A.89, E.90, R.96, S.97, D.99, I.100
Ligand excluded by PLIPHTG.199: 10 residues within 4Å:- Chain A: I.50, L.102
- Chain U: W.74, D.86, G.88, F.89
- Ligands: BCR.5, DMS.15, UNL.132, HTG.200
Ligand excluded by PLIPHTG.200: 4 residues within 4Å:- Chain U: F.89
- Ligands: UNL.133, HTG.199, CLA.206
Ligand excluded by PLIPHTG.222: 4 residues within 4Å:- Chain U: W.184, A.203, I.206
- Ligands: CLA.201
Ligand excluded by PLIPHTG.223: 11 residues within 4Å:- Chain 5: Q.174, A.175, K.176
- Chain U: K.340, S.418, Y.419, K.422, F.429, E.430, F.431, T.433
Ligand excluded by PLIPHTG.264: 6 residues within 4Å:- Chain V: W.79, F.163, F.164, G.165
- Ligands: CLA.246, LMG.262
Ligand excluded by PLIPHTG.265: 6 residues within 4Å:- Chain V: V.158, F.163, T.182, N.183, P.184, L.186
Ligand excluded by PLIPHTG.281: 5 residues within 4Å:- Chain W: G.3, W.4, F.5
- Chain Z: W.24
- Ligands: UNL.289
Ligand excluded by PLIPHTG.330: 8 residues within 4Å:- Chain 7: N.28, P.54, Y.55, E.56, V.84, T.85, E.86
- Ligands: DMS.332
Ligand excluded by PLIPHTG.343: 9 residues within 4Å:- Chain 8: N.13, S.14, E.15, P.64, P.65, N.68, E.70, G.71, D.74
Ligand excluded by PLIP- 6 x CA: CALCIUM ION(Non-covalent)
CA.45: 2 residues within 4Å:- Chain B: E.434, N.437
No protein-ligand interaction detected (PLIP)CA.150: 3 residues within 4Å:- Chain M: T.136, N.198, V.199
5 PLIP interactions:2 interactions with chain M, 3 Ligand-Water interactions- Metal complexes: M:T.136, M:V.199, H2O.55, H2O.57, H2O.59
CA.170: 1 residues within 4Å:- Chain P: E.2
5 PLIP interactions:1 interactions with chain P, 4 Ligand-Water interactions- Metal complexes: P:E.2, H2O.1, H2O.69, H2O.69, H2O.72
CA.224: 1 residues within 4Å:- Chain U: N.437
No protein-ligand interaction detected (PLIP)CA.266: 5 residues within 4Å:- Chain V: F.4, T.6, D.9, E.11, S.12
5 PLIP interactions:4 interactions with chain V, 1 Ligand-Water interactions- Metal complexes: V:F.4, V:T.6, V:E.11, V:S.12, H2O.106
CA.320: 3 residues within 4Å:- Chain 5: T.136, N.198, V.199
5 PLIP interactions:2 interactions with chain 5, 3 Ligand-Water interactions- Metal complexes: 5:T.136, 5:V.199, H2O.130, H2O.134, H2O.136
- 17 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.46: 10 residues within 4Å:- Chain B: R.223, L.224, A.227
- Chain D: D.6, D.9
- Chain G: W.24, M.30, M.34
- Ligands: UNL.112, UNL.129
Ligand excluded by PLIPLMT.47: 12 residues within 4Å:- Chain 4: M.1
- Chain 6: M.1, I.4, V.7, F.8, A.11
- Chain B: Y.39, A.42, T.43
- Chain T: L.72
- Ligands: LMT.197, BCR.328
Ligand excluded by PLIPLMT.48: 7 residues within 4Å:- Chain 4: L.8
- Chain 6: I.4, F.8
- Chain B: Y.39
- Chain L: L.6
- Ligands: CLA.36, LMG.41
Ligand excluded by PLIPLMT.120: 6 residues within 4Å:- Chain E: F.30, W.34, S.38
- Chain F: F.41
- Chain I: G.20
- Ligands: UNL.121
Ligand excluded by PLIPLMT.131: 13 residues within 4Å:- Chain A: W.14, E.15
- Chain C: W.241, R.244
- Chain H: L.17, V.20, L.24, S.25, G.26, R.30
- Ligands: CLA.4, CLA.74, UNL.136
Ligand excluded by PLIPLMT.139: 9 residues within 4Å:- Chain I: V.25, G.26, Y.30, Y.33, A.34
- Ligands: DGD.85, DGD.86, LMG.87, UNL.143
Ligand excluded by PLIPLMT.148: 14 residues within 4Å:- Chain 3: P.9, V.10
- Chain 4: V.20, I.24, Q.28, Q.32
- Chain L: V.27, E.30, S.31, Q.32, Q.33
- Ligands: UNL.149, CLA.214, DMS.235
Ligand excluded by PLIPLMT.162: 9 residues within 4Å:- Chain A: L.72
- Chain L: M.1
- Chain N: M.1, I.4, F.8
- Chain U: A.42, T.43
- Ligands: BCR.161, DMS.234
Ligand excluded by PLIPLMT.178: 14 residues within 4Å:- Chain C: F.109, Y.113, R.117
- Chain S: M.19, Y.27, W.33, K.37, I.40, F.41, S.44, W.47, I.48
- Ligands: CLA.79, CLA.81
Ligand excluded by PLIPLMT.197: 13 residues within 4Å:- Chain B: L.38, L.41, A.42
- Chain T: I.53, L.72, Y.73, G.74
- Chain W: R.294
- Ligands: HTG.42, LMT.47, UNL.181, DMS.324, UNL.329
Ligand excluded by PLIPLMT.225: 10 residues within 4Å:- Chain A: I.53, L.72, Y.73, G.74
- Chain D: R.294
- Chain M: G.110
- Chain U: L.38, A.42
- Ligands: HTG.151, DMS.234
Ligand excluded by PLIPLMT.226: 12 residues within 4Å:- Chain U: R.223, L.224, A.227, K.497
- Chain W: F.5, D.6, D.9
- Chain Z: W.24, M.30, A.31, M.34
- Ligands: UNL.289
Ligand excluded by PLIPLMT.267: 12 residues within 4Å:- Chain 0: L.24, S.25, G.26, R.30
- Chain T: N.12, W.14, E.15
- Chain V: W.241, R.244
- Ligands: UNL.195, CLA.250, CLA.251
Ligand excluded by PLIPLMT.300: 6 residues within 4Å:- Chain 1: V.23
- Chain X: W.34, S.38
- Chain Y: A.38, F.41
- Ligands: UNL.297
Ligand excluded by PLIPLMT.318: 8 residues within 4Å:- Chain 4: Q.5, L.6
- Chain L: M.1, E.2
- Chain N: I.4, F.8
- Chain U: Y.39
- Ligands: LMG.221
Ligand excluded by PLIPLMT.319: 16 residues within 4Å:- Chain 4: V.27, E.30, S.31, Q.32, Q.33, K.34
- Chain K: R.7, P.9, V.10
- Chain L: V.20, I.24, L.25, Q.28, Q.32
- Ligands: CLA.36, UNL.147
Ligand excluded by PLIPLMT.347: 12 residues within 4Å:- Chain V: F.109, Y.113, R.117, G.118
- Ligands: CLA.257
- Chain b: M.19, Y.27, W.33, K.37, F.41, S.44, W.47
Ligand excluded by PLIP- 10 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.84: 31 residues within 4Å:- Chain A: L.91, S.148, L.151, A.152, F.155, I.163
- Chain C: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, L.420
- Ligands: CLA.4, LMG.7, CLA.73, CLA.74
22 PLIP interactions:4 interactions with chain A, 18 interactions with chain C- Hydrophobic interactions: A:L.151, A:F.155, A:F.155, A:I.163, C:P.199, C:F.200, C:W.205, C:V.207, C:F.266, C:F.266, C:L.420
- Hydrogen bonds: C:G.202, C:N.276, C:T.277, C:T.277, C:T.277, C:D.342, C:R.344, C:R.344
- Water bridges: C:F.200, C:D.342, C:D.342
DGD.85: 21 residues within 4Å:- Chain A: H.195, F.197, L.297
- Chain C: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, T.410, S.411, V.414
- Chain I: Y.33
- Ligands: CLA.72, DGD.86, LMG.87, LMT.139, UNL.142
15 PLIP interactions:12 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:L.386, C:W.407, C:V.414, A:F.197, A:F.197, A:L.297
- Hydrogen bonds: C:S.388, C:N.400, C:N.400, C:V.402, C:V.402, C:W.407
- Water bridges: C:E.65, C:G.67, C:G.67
DGD.86: 33 residues within 4Å:- Chain A: P.196, Q.199, L.200, A.203, F.300, N.301, F.302, S.305
- Chain C: L.386, N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain D: N.62, L.64
- Chain I: F.29, A.32, Y.33, G.37, S.38, S.39
- Chain P: Q.34
- Ligands: CLA.2, CLA.72, CLA.76, DGD.85, UNL.91, LHG.111, LMG.137, LMT.139
19 PLIP interactions:3 interactions with chain I, 7 interactions with chain C, 6 interactions with chain A, 2 interactions with chain D, 1 interactions with chain P- Hydrogen bonds: I:G.37, I:S.39, C:N.387, C:N.397, C:S.398, C:S.398, C:V.399, A:S.305, P:Q.34
- Water bridges: I:S.39, C:N.397, C:N.400
- Hydrophobic interactions: A:Q.199, A:L.200, A:L.200, A:A.203, A:F.300, D:L.64, D:L.64
DGD.108: 9 residues within 4Å:- Chain D: L.82, G.89, D.90, F.91, T.92
- Chain E: F.36, D.44, F.46
- Ligands: BCR.107
7 PLIP interactions:4 interactions with chain D, 3 interactions with chain E- Hydrophobic interactions: D:L.82, D:F.91, D:F.91, E:F.36, E:F.46
- Hydrogen bonds: D:T.92, E:D.44
DGD.127: 25 residues within 4Å:- Chain B: Y.192, F.249, Y.257, Y.272, Q.273, S.276, Y.278, T.451, A.455, F.462
- Chain D: G.76, H.77, A.109, I.113, I.149, L.152, G.153, L.281
- Chain G: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.24
25 PLIP interactions:9 interactions with chain B, 10 interactions with chain D, 6 interactions with chain G- Hydrophobic interactions: B:Y.257, B:T.451, B:A.455, B:F.462, D:A.109, D:I.113, D:I.149, D:L.152, D:L.152, D:L.281, G:Y.48, G:Y.48, G:Y.48
- Hydrogen bonds: B:Y.192, B:Y.257, B:S.276, B:S.276, D:H.77, D:H.77, D:S.155, G:N.49, G:V.59, G:S.60
- Water bridges: B:T.270, D:H.77
DGD.259: 31 residues within 4Å:- Chain T: L.91, S.148, L.151, A.152, F.155, I.160, I.163
- Chain V: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, L.420
- Ligands: LMG.189, CLA.249, CLA.250
20 PLIP interactions:5 interactions with chain T, 15 interactions with chain V- Hydrophobic interactions: T:L.151, T:F.155, T:F.155, T:I.160, T:I.163, V:F.200, V:F.200, V:W.205, V:V.207, V:F.266, V:L.420
- Hydrogen bonds: V:G.202, V:N.276, V:T.277, V:T.277, V:D.342, V:R.344, V:R.344
- Water bridges: V:F.200, V:D.342
DGD.260: 20 residues within 4Å:- Chain 1: F.29, Y.33
- Chain T: H.195, F.197
- Chain V: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, T.410, S.411, V.414
- Ligands: CLA.248, DGD.261, LMG.263, UNL.311
15 PLIP interactions:12 interactions with chain V, 1 interactions with chain 1, 2 interactions with chain T- Hydrophobic interactions: V:L.386, V:W.407, V:V.414, 1:F.29, T:F.197, T:F.197
- Hydrogen bonds: V:S.388, V:N.400, V:N.400, V:V.402, V:V.402, V:W.407
- Water bridges: V:E.65, V:G.67, V:G.67
DGD.261: 31 residues within 4Å:- Chain 1: F.29, A.32, Y.33, G.37, S.38, S.39
- Chain 8: Q.34
- Chain T: P.196, Q.199, L.200, A.203, W.278, F.300, N.301, F.302, S.305
- Chain V: L.386, N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain W: N.62, L.64
- Ligands: CLA.183, CLA.248, DGD.260, LHG.288, LMG.308
21 PLIP interactions:1 interactions with chain W, 7 interactions with chain V, 7 interactions with chain T, 5 interactions with chain 1, 1 interactions with chain 8- Hydrophobic interactions: W:L.64, T:Q.199, T:L.200, T:L.200, T:W.278, T:F.300, T:F.300, 1:F.29
- Hydrogen bonds: V:N.387, V:N.397, V:S.398, V:S.398, V:V.399, T:S.305, 1:G.37, 1:S.39, 8:Q.34
- Water bridges: V:N.397, V:N.400, 1:G.37, 1:S.39
DGD.296: 10 residues within 4Å:- Chain W: L.82, G.89, F.91, T.92, R.93
- Chain X: D.44, V.45
- Chain Y: F.31
- Ligands: CLA.284, BCR.285
7 PLIP interactions:1 interactions with chain Y, 5 interactions with chain W, 1 interactions with chain X- Hydrophobic interactions: Y:F.31, W:L.82, W:F.91, X:V.45
- Hydrogen bonds: W:T.92, W:R.93, W:R.93
DGD.301: 28 residues within 4Å:- Chain U: Y.192, F.249, G.253, Y.257, Y.272, Q.273, S.276, Y.278, T.451, A.455, F.462
- Chain W: G.76, H.77, F.110, I.113, I.149, L.152, G.153, A.280, L.281
- Chain Z: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.202, CLA.208
28 PLIP interactions:11 interactions with chain W, 7 interactions with chain Z, 10 interactions with chain U- Hydrophobic interactions: W:F.110, W:I.113, W:I.149, W:L.152, W:L.152, W:A.280, W:L.281, Z:Y.48, Z:Y.48, Z:Y.48, U:F.249, U:Y.257, U:T.451, U:A.455, U:F.462, U:F.462
- Hydrogen bonds: W:H.77, W:H.77, W:S.155, Z:N.49, Z:V.59, Z:S.60, U:Y.192, U:Y.192, U:Y.257
- Water bridges: W:H.77, Z:S.60, U:T.270
- 9 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.109: 26 residues within 4Å:- Chain A: S.232, N.234
- Chain B: W.4, Y.5, R.6, L.460, F.463, W.467, F.478
- Chain D: Y.131, I.134, W.256, F.259, L.262, V.266, T.267, W.270
- Chain K: L.23, I.24
- Chain L: F.14, P.18
- Ligands: CLA.29, CLA.33, CLA.35, LMG.41, LHG.146
20 PLIP interactions:10 interactions with chain B, 5 interactions with chain D, 3 interactions with chain A, 1 interactions with chain L, 1 interactions with chain K- Hydrophobic interactions: B:W.4, B:W.4, B:Y.5, B:L.460, B:F.463, B:F.463, D:L.262, D:V.266, D:W.270, L:P.18, K:I.24
- Hydrogen bonds: B:Y.5, A:S.232, A:N.234
- Water bridges: B:R.6, B:R.6, D:R.129, D:Y.131, A:A.233
- Salt bridges: B:R.6
LHG.110: 28 residues within 4Å:- Chain A: M.37, R.129
- Chain D: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Chain K: N.13, T.15, S.16, Y.18, L.19, L.22, L.29
- Chain N: F.10, F.17, A.20, I.21
- Ligands: CLA.1, PHO.3, CLA.104, PL9.114, LHG.146, BCR.161
20 PLIP interactions:8 interactions with chain D, 6 interactions with chain N, 5 interactions with chain K, 1 interactions with chain A- Hydrophobic interactions: D:F.247, D:I.249, D:F.251, D:F.251, D:F.260, N:F.10, N:F.17, N:F.17, N:F.17, N:A.20, N:I.21, K:Y.18, K:L.22, K:L.29
- Hydrogen bonds: D:S.252, D:S.252, D:N.253, K:N.13, K:N.13, A:N.234
LHG.111: 24 residues within 4Å:- Chain A: R.140, W.142, A.146, F.273, A.276, A.277, W.284, F.285
- Chain C: F.15, W.18, A.19, W.425, R.429
- Chain D: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.6, CLA.72, CLA.76, CLA.78, DGD.86
16 PLIP interactions:4 interactions with chain D, 7 interactions with chain A, 5 interactions with chain C- Hydrogen bonds: D:N.210, D:A.219, D:S.220, D:T.221, C:R.429, C:R.429
- Hydrophobic interactions: A:W.142, A:F.273, A:F.273, A:A.277, A:W.284, A:F.285, C:W.18, C:W.18, C:W.425
- Salt bridges: A:R.140
LHG.122: 17 residues within 4Å:- Chain A: L.258, I.259, F.260, Y.262, A.263, F.265
- Chain D: F.17, F.28, R.118
- Chain E: E.6, P.8, F.9, S.10
- Chain F: R.18, A.21
- Ligands: SQD.6, PL9.11
12 PLIP interactions:2 interactions with chain D, 3 interactions with chain E, 2 interactions with chain F, 5 interactions with chain A- Hydrophobic interactions: D:F.17, D:F.28, E:F.9, F:A.21, A:F.260, A:F.260, A:F.265, A:F.265, A:F.265
- Hydrogen bonds: E:F.9, E:S.10, F:R.18
LHG.146: 26 residues within 4Å:- Chain A: S.232, N.234
- Chain B: P.3, W.4, Y.5
- Chain D: A.192, W.256, F.259, F.260, F.263
- Chain K: E.11, L.12, N.13, S.16, L.19, G.20, L.22, L.23, V.26
- Chain L: P.18, F.21
- Ligands: CLA.33, CLA.104, LHG.109, LHG.110, PL9.114
17 PLIP interactions:5 interactions with chain D, 1 interactions with chain L, 1 interactions with chain B, 7 interactions with chain K, 3 interactions with chain A- Hydrophobic interactions: D:A.192, D:F.259, D:F.263, D:F.263, D:F.263, L:P.18, K:L.22, K:V.26
- Hydrogen bonds: B:W.4, K:E.11, K:E.11, K:N.13, K:S.16, A:S.232, A:S.232, A:N.234
- Water bridges: K:N.13
LHG.286: 21 residues within 4Å:- Chain 3: L.23
- Chain 4: P.18
- Chain T: S.232, N.234
- Chain U: W.4, Y.5, R.6, L.460, F.463, W.467
- Chain W: Y.131, I.134, W.256, F.259, T.267, W.270, M.271
- Ligands: CLA.207, CLA.211, CLA.213, LHG.317
16 PLIP interactions:1 interactions with chain 4, 10 interactions with chain U, 3 interactions with chain W, 2 interactions with chain T- Hydrophobic interactions: 4:P.18, U:W.4, U:Y.5, U:L.460, U:F.463, W:W.270
- Hydrogen bonds: U:Y.5, T:S.232, T:N.234
- Water bridges: U:Y.5, U:R.6, U:R.6, U:R.6, W:R.129, W:Y.131
- Salt bridges: U:R.6
LHG.287: 27 residues within 4Å:- Chain 3: N.13, T.15, S.16, Y.18, L.19, L.22, V.26, L.29
- Chain 6: F.10, F.17, A.20
- Chain T: R.129
- Chain W: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Ligands: CLA.182, PHO.184, CLA.283, PL9.292, LHG.317, BCR.328
21 PLIP interactions:9 interactions with chain W, 5 interactions with chain 6, 7 interactions with chain 3- Hydrophobic interactions: W:F.247, W:I.249, W:F.251, W:F.251, W:F.260, W:F.260, 6:F.10, 6:F.17, 6:F.17, 6:F.17, 6:A.20, 3:Y.18, 3:L.22, 3:V.26, 3:L.29
- Hydrogen bonds: W:S.252, W:S.252, W:N.253, 3:N.13, 3:N.13
- Water bridges: 3:T.15
LHG.288: 25 residues within 4Å:- Chain T: R.140, W.142, V.145, A.146, F.273, A.276, V.281, W.284, F.285
- Chain V: F.15, W.18, A.19, W.425, R.429
- Chain W: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.188, CLA.248, CLA.252, CLA.254, DGD.261
20 PLIP interactions:5 interactions with chain W, 11 interactions with chain T, 4 interactions with chain V- Hydrogen bonds: W:N.210, W:A.219, W:S.220, W:T.221, V:R.429, V:R.429
- Water bridges: W:T.221, T:R.140, T:R.140
- Hydrophobic interactions: T:W.142, T:V.145, T:A.146, T:F.273, T:V.281, T:W.284, T:W.284, T:F.285, V:W.18, V:W.18
- Salt bridges: T:R.140
LHG.317: 26 residues within 4Å:- Chain 3: E.11, L.12, N.13, S.16, L.19, G.20, L.22, L.23, V.26
- Chain 4: P.18, F.21
- Chain T: S.232, N.234
- Chain U: P.3, W.4, Y.5
- Chain W: A.192, W.256, F.259, F.260, F.263
- Ligands: CLA.211, CLA.283, LHG.286, LHG.287, PL9.292
14 PLIP interactions:4 interactions with chain W, 6 interactions with chain 3, 3 interactions with chain T, 1 interactions with chain U- Hydrophobic interactions: W:A.192, W:F.259, W:F.263, W:F.263, 3:L.22, 3:V.26
- Hydrogen bonds: 3:E.11, 3:E.11, 3:N.13, 3:S.16, T:S.232, T:S.232, T:N.234, U:W.4
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.123: 18 residues within 4Å:- Chain E: R.7, F.9, I.12, R.17, Y.18, I.21, H.22, T.25, I.26, L.29
- Chain F: I.14, R.18, W.19, V.22, H.23, A.26, V.27, I.30
25 PLIP interactions:12 interactions with chain E, 13 interactions with chain F,- Hydrophobic interactions: E:F.9, E:I.12, E:I.21, E:T.25, E:I.26, E:I.26, F:I.14, F:W.19, F:V.22, F:A.26, F:V.27, F:I.30, F:I.30
- Water bridges: E:R.7, E:R.7, F:I.14, F:R.18
- Salt bridges: E:R.7, E:R.17, F:R.18
- pi-Stacking: E:Y.18, F:W.19, F:W.19
- Metal complexes: E:H.22, F:H.23
HEM.298: 16 residues within 4Å:- Chain X: F.9, I.12, R.17, Y.18, I.21, H.22, T.25, I.26, L.29
- Chain Y: R.18, W.19, V.22, H.23, A.26, V.27, I.30
21 PLIP interactions:8 interactions with chain Y, 13 interactions with chain X,- Hydrophobic interactions: Y:W.19, Y:V.22, Y:A.26, Y:V.27, X:F.9, X:I.12, X:Y.18, X:I.21, X:I.21, X:T.25, X:I.26
- Salt bridges: Y:R.18, X:R.17
- pi-Stacking: Y:W.19, Y:W.19, X:Y.18
- Metal complexes: Y:H.23, X:H.22
- Hydrogen bonds: X:S.15
- Water bridges: X:R.7, X:R.17
- 2 x RRX: (3R)-beta,beta-caroten-3-ol(Non-covalent)
RRX.126: 16 residues within 4Å:- Chain G: M.30, F.33, M.34, L.36, F.37, V.39, F.40, I.43, L.54
- Chain R: T.1, L.6, F.10
- Ligands: CLA.23, CLA.24, CLA.31, CLA.32
10 PLIP interactions:6 interactions with chain G, 4 interactions with chain R- Hydrophobic interactions: G:F.37, G:F.37, G:V.39, G:F.40, G:I.43, G:L.54, R:L.6, R:F.10, R:F.10
- Hydrogen bonds: R:T.1
RRX.344: 16 residues within 4Å:- Chain Z: M.30, F.33, M.34, L.36, F.37, V.39, F.40, I.43
- Ligands: CLA.201, CLA.202, CLA.203, CLA.209, CLA.210
- Chain a: T.1, L.6, F.10
9 PLIP interactions:3 interactions with chain a, 6 interactions with chain Z- Hydrophobic interactions: a:L.6, a:F.10, Z:L.36, Z:F.37, Z:F.37, Z:V.39, Z:F.40, Z:I.43
- Hydrogen bonds: a:T.1
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.138: 5 residues within 4Å:- Chain I: G.31, A.34, G.35, L.36
- Ligands: LMG.137
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:G.31, I:A.34, I:L.36, H2O.46
MG.310: 5 residues within 4Å:- Chain 1: G.31, A.34, G.35, L.36
- Ligands: LMG.308
4 PLIP interactions:3 interactions with chain 1, 1 Ligand-Water interactions- Metal complexes: 1:G.31, 1:A.34, 1:L.36, H2O.123
- 2 x HEC: HEME C(Covalent)
HEC.168: 25 residues within 4Å:- Chain P: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, A.62, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
19 PLIP interactions:19 interactions with chain P,- Hydrophobic interactions: P:A.36, P:T.46, P:N.49, P:L.52, P:L.54, P:L.72, P:Y.75, P:Y.75, P:Y.75, P:I.88, P:P.93, P:I.115, P:I.119
- Hydrogen bonds: P:D.53, P:Y.82
- Water bridges: P:N.49
- pi-Stacking: P:Y.75
- Metal complexes: P:H.41, P:H.92
HEC.334: 25 residues within 4Å:- Chain 8: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, A.62, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
17 PLIP interactions:17 interactions with chain 8,- Hydrophobic interactions: 8:A.36, 8:T.46, 8:N.49, 8:L.52, 8:L.54, 8:L.72, 8:Y.75, 8:I.88, 8:P.93, 8:I.115, 8:I.119
- Hydrogen bonds: 8:D.53, 8:Y.82
- Water bridges: 8:N.49
- pi-Stacking: 8:Y.75
- Metal complexes: 8:H.41, 8:H.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tanaka, A. et al., Two Different Structures of the Oxygen-Evolving Complex in the Same Polypeptide Frameworks of Photosystem II. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-02-01
- Peptides
- Photosystem II protein D1: AT
Photosystem II CP47 reaction center protein: BU
Photosystem II CP43 reaction center protein: CV
Photosystem II D2 protein: DW
Cytochrome b559 subunit alpha: EX
Cytochrome b559 subunit beta: FY
Photosystem II reaction center protein H: GZ
Photosystem II reaction center protein I: H0
Photosystem II reaction center protein J: I1
Photosystem II reaction center protein K: J2
Photosystem II reaction center protein L: K3
Photosystem II reaction center protein M: L4
Photosystem II manganese-stabilizing polypeptide: M5
Photosystem II reaction center protein T: N6
Photosystem II 12 kDa extrinsic protein: O7
Cytochrome c-550: P8
Photosystem II reaction center protein Ycf12: Q9
Photosystem II reaction center protein X: Ra
Photosystem II reaction center protein Z: Sb - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AT
aB
BU
bC
CV
cD
DW
dE
EX
eF
FY
fG
HZ
hH
I0
iI
J1
jJ
K2
kK
L3
lL
M4
mM
O5
oN
T6
tO
U7
uP
V8
vQ
Y9
yR
Xa
xS
Zb
z - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 5b66.1
Crystal structure analysis of Photosystem II complex
Photosystem II protein D1
Toggle Identical (AT)Photosystem II CP47 reaction center protein
Photosystem II CP43 reaction center protein
Photosystem II D2 protein
Toggle Identical (DW)Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Photosystem II reaction center protein I
Photosystem II reaction center protein J
Photosystem II reaction center protein K
Toggle Identical (J2)Photosystem II reaction center protein L
Toggle Identical (K3)Photosystem II reaction center protein M
Photosystem II manganese-stabilizing polypeptide
Toggle Identical (M5)Photosystem II reaction center protein T
Photosystem II 12 kDa extrinsic protein
Toggle Identical (O7)Cytochrome c-550
Toggle Identical (P8)Photosystem II reaction center protein Ycf12
Toggle Identical (Q9)Photosystem II reaction center protein X
Photosystem II reaction center protein Z
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1izl.1 | 1mz4.1 | 1s5l.1 | 1s5l.2 | 1w5c.1 | 1w5c.2 | 2axt.1 | 3a0b.1 | 3a0h.1 | 3kzi.1 | 3wu2.1 | 4fby.1 | 4il6.1 | 4ixq.1 | 4ixr.1 | 4pbu.1 | 4pj0.1 | 4rvy.1 | 4tnh.1 | 4tni.1 | 4tnj.1 | 4tnk.1 | 4ub6.1 | 4ub6.2 | 4ub8.1 | 4ub8.2 | 4v62.1 | 4v62.2 | 4v82.1 | 5b5e.1 more...less...5e79.1 | 5e7c.1 | 5gth.1 | 5gth.2 | 5gti.1 | 5gti.2 | 5h2f.1 | 5h2f.2 | 5kaf.1 | 5kai.1 | 5mx2.1 | 5mx2.2 | 5tis.1 | 5v2c.1 | 5ws5.1 | 5ws5.2 | 5ws6.1 | 5ws6.2 | 5zzn.1 | 5zzn.2 | 6dhe.1 | 6dhf.1 | 6dhg.1 | 6dhh.1 | 6dho.1 | 6dhp.1 | 6jlj.1 | 6jlk.1 | 6jll.1 | 6jlm.1 | 6jln.1 | 6jlo.1 | 6jlp.1 | 6w1o.1 | 6w1p.1 | 6w1q.1 | 6w1r.1 | 6w1t.1 | 6w1u.1 | 6w1v.1 | 7cji.1 | 7cjj.1 | 7cou.1 | 7czl.1 | 7d1t.1 | 7d1u.1 | 7dxa.1 | 7dxh.1 | 7eda.1 | 7nho.1 | 7nhp.1 | 7nhq.1 | 7rf1.1 | 7rf2.1 | 7rf3.1 | 7rf4.1 | 7rf5.1 | 7rf6.1 | 7rf7.1 | 7rf8.1 | 7yq2.1 | 7yq7.1 | 8ez5.1 | 8f4c.1 | 8f4d.1 | 8f4e.1 | 8f4f.1 | 8f4g.1 | 8f4h.1 | 8f4i.1 | 8f4j.1 | 8f4k.1 | 8gn0.1 | 8gn1.1 | 8gn2.1 | 8ir5.1 | 8ir6.1 | 8ir7.1 | 8ir8.1 | 8ir9.1 | 8ira.1 | 8irb.1 | 8irc.1 | 8ird.1 | 8ire.1 | 8irf.1 | 8irg.1 | 8irh.1 | 8iri.1 | 9evx.1