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SMTL ID : 7w3k.1

Structure of USP14-bound human 26S proteasome in substrate-inhibited state SD4_USP14

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-2-2-2-2-2-2-2-2-2-2-2-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1:	15 residues within 4Å: Chain A: D.176, V.177, G.178, P.218, G.219, T.220, G.221, K.222, T.223, L.224, C.225, I.354, H.358, G.382, A.383 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.178, A:G.178, A:G.221, A:K.222, A:T.223, A:T.223, A:L.224, A:C.225, A:A.383 Salt bridges: B:R.343
ADP.2:	12 residues within 4Å: Chain B: G.188, P.228, G.229, T.230, G.231, K.232, T.233, L.234, I.364, G.392, A.393, K.396 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.188, B:P.228, B:G.231, B:K.232, B:T.233, B:T.233, B:L.234, B:K.396 Salt bridges: B:K.232

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3:	15 residues within 4Å: Chain C: I.149, P.190, G.191, T.192, G.193, K.194, T.195, L.196, N.294, I.326, H.330, G.354, A.355 Chain D: R.344, R.347 13 PLIP interactions: 11 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:G.150, C:T.192, C:T.192, C:G.193, C:K.194, C:T.195, C:L.196, C:N.294, C:G.354, C:R.358 Salt bridges: C:K.194, D:R.344, D:R.347
ATP.4:	14 residues within 4Å: Chain A: I.303, R.336 Chain D: P.229, G.230, T.231, G.232, K.233, T.234, L.235, R.238, N.333, I.365, G.393, A.394 12 PLIP interactions: 9 interactions with chain D, 3 interactions with chain A Hydrogen bonds: D:T.231, D:G.232, D:K.233, D:T.234, D:L.235, D:R.238, D:N.333, D:N.333 Salt bridges: D:K.233, A:R.336, A:R.336, A:R.336

1 x ZN: ZINC ION(Non-covalent)

ZN.5:

3 residues within 4Å:

Chain h: H.113, H.115, D.126

4 PLIP interactions:

4 interactions with chain h

Metal complexes: h:H.113, h:H.115, h:D.126, h:D.126

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhang, S. et al., USP14-regulated allostery of the human proteasome by time-resolved cryo-EM. Nature (2022)

Release Date

2022-05-04

Peptides

26S protease regulatory subunit 7: A
26S protease regulatory subunit 4: B
26S proteasome regulatory subunit 10B: C
26S protease regulatory subunit 6A: D
Proteasome subunit alpha type-6: ES
Proteasome subunit alpha type-2: FT
Proteasome subunit alpha type-4: GU
Proteasome subunit alpha type-7: HV
Proteasome subunit alpha type-5: IW
Isoform Long of Proteasome subunit alpha type-1: JX
Proteasome subunit alpha type-3: KY
Proteasome subunit beta type-6: LZ
Proteasome subunit beta type-7: M0
Proteasome subunit beta type-3: N1
Proteasome subunit beta type-2: O2
Proteasome subunit beta type-5: P3
Proteasome subunit beta type-1: Q4
Proteasome subunit beta type-4: R5
Ubiquitin carboxyl-terminal hydrolase 14: 6
Ubiquitin: 7
Isoform 2 of 26S proteasome regulatory subunit 8: 8
26S protease regulatory subunit 6B: 9
26S proteasome non-ATPase regulatory subunit 1: a
26S proteasome non-ATPase regulatory subunit 12: b
26S proteasome non-ATPase regulatory subunit 11: c
26S proteasome non-ATPase regulatory subunit 6: d
26S proteasome non-ATPase regulatory subunit 7: e
26S proteasome non-ATPase regulatory subunit 13: f
26S proteasome non-ATPase regulatory subunit 4: g
26S proteasome non-ATPase regulatory subunit 14: h
26S proteasome non-ATPase regulatory subunit 8: i
26S proteasome non-ATPase regulatory subunit 2: j
26S proteasome non-ATPase regulatory subunit 3: k
26S proteasome complex subunit DSS1: l

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

D
F

E
G

S
g

F
H

T
h

G
I

U
i

H
J

V
j

I
K

W
k

J
L

X
l

K
M

Y
m

L
N

Z
n

M
O

0
o

N
P

1
p

O
Q

2
q

P
R

3
r

Q
S

4
s

R
T

5
t

6
x

7
y

8
C

9
D

a
U

b
W

c
X

d
Y

e
Z

f
a

g
b

h
c

i
d

j
f

k
V

l
e

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

26S protease regulatory subunit 7

26S protease regulatory subunit 4

26S proteasome regulatory subunit 10B

26S protease regulatory subunit 6A

Proteasome subunit alpha type-6

Proteasome subunit alpha type-2

Toggle Identical (FT)

Proteasome subunit alpha type-4

Proteasome subunit alpha type-7

Toggle Identical (HV)

Proteasome subunit alpha type-5

Isoform Long of Proteasome subunit alpha type-1

Proteasome subunit alpha type-3

Proteasome subunit beta type-6

Proteasome subunit beta type-7

Toggle Identical (M0)

Proteasome subunit beta type-3

Toggle Identical (N1)

Proteasome subunit beta type-2

Toggle Identical (O2)

Proteasome subunit beta type-5

Toggle Identical (P3)

Proteasome subunit beta type-1

Toggle Identical (Q4)

Proteasome subunit beta type-4

Toggle Identical (R5)

Ubiquitin carboxyl-terminal hydrolase 14

Ubiquitin

Isoform 2 of 26S proteasome regulatory subunit 8

26S protease regulatory subunit 6B

26S proteasome non-ATPase regulatory subunit 1

26S proteasome non-ATPase regulatory subunit 12

26S proteasome non-ATPase regulatory subunit 11

26S proteasome non-ATPase regulatory subunit 6

26S proteasome non-ATPase regulatory subunit 7

26S proteasome non-ATPase regulatory subunit 13

26S proteasome non-ATPase regulatory subunit 4

26S proteasome non-ATPase regulatory subunit 14

26S proteasome non-ATPase regulatory subunit 8

26S proteasome non-ATPase regulatory subunit 2

26S proteasome non-ATPase regulatory subunit 3

26S proteasome complex subunit DSS1

Related Entries With Identical Sequence

1aar.1 | 1cmx.1 | 1d3z.1 | 1f9j.1 | 1fxt.1 | 1g6j.1 | 1iru.1 | 1iyj.1 | 1iyj.2 | 1miu.1 | 1miu.2 | 1mje.1 | 1nbf.1 | 1nbf.2 | 1ogw.1 | 1p3q.1 | 1p3q.2 | 1q5w.1 | 1s1q.1 | 1s1q.2 | 1tbe.1 | 1ubi.1 | 1ubq.1 | 1uzx.1 | 1v80.1 | 1v81.1 | 1wr6.1 | 1wr6.2 | 1wr6.3 | 1wr6.4 more...less...

1wrd.1 | 1wrd.2 | 1xqq.1 | 1yd8.1 | 1yd8.2 | 2ayo.1 | 2ayo.2 | 2bgf.1 | 2c7m.1 | 2c7n.1 | 2c7n.2 | 2c7n.3 | 2c7n.4 | 2c7n.5 | 2c7n.6 | 2d3g.1 | 2den.1 | 2dx5.1 | 2fid.1 | 2fif.1 | 2fif.2 | 2fif.3 | 2fuh.1 | 2g45.1 | 2g45.2 | 2gmi.1 | 2hd5.1 | 2hth.1 | 2jf5.1 | 2jri.1 | 2jy6.1 | 2jzz.1 | 2k39.1 | 2k8b.1 | 2k8c.1 | 2kde.1 | 2kdf.1 | 2klg.1 | 2kn5.1 | 2kox.1 | 2ktf.1 | 2kwu.1 | 2kwv.1 | 2l0f.1 | 2l0t.1 | 2l3z.1 | 2lj5.1 | 2lvo.1 | 2lvp.1 | 2lvq.1 | 2lz6.1 | 2mbh.1 | 2mbo.1 | 2mbq.1 | 2mcn.1 | 2mj5.1 | 2mjb.1 | 2mor.1 | 2mro.1 | 2n3u.1 | 2n3v.1 | 2n3w.1 | 2nr2.1 | 2o6v.1 | 2o6v.2 | 2o6v.3 | 2oob.1 | 2pe9.1 | 2pea.1 | 2qho.1 | 2qho.2 | 2qho.3 | 2qho.4 | 2rr9.1 | 2wwz.1 | 2wx0.1 | 2wx0.2 | 2wx1.1 | 2xbb.1 | 2xbb.2 | 2xew.1 | 2xew.2 | 2xew.3 | 2xk5.1 | 2z59.1 | 2zcc.1 | 2zcc.2 | 2zcc.3 | 2zcc.4 | 3a33.1 | 3alb.1 | 3aul.1 | 3eec.1 | 3eec.2 | 3eec.3 | 3eec.4 | 3efu.1 | 3ehv.1 | 3ehv.2 | 3ehv.3 | 3h1u.1 | 3h1u.2 | 3h7p.1 | 3h7s.1 | 3h7s.2 | 3h7s.3 | 3hm3.1 | 3hm3.2 | 3hm3.3 | 3hm3.4 | 3m3j.1 | 3m3j.2 | 3m3j.3 | 3mhs.1 | 3n30.1 | 3n30.2 | 3n32.1 | 3nhe.1 | 3ns8.1 | 3ns8.2 | 3ns8.3 | 3ofi.1 | 3ofi.2 | 3phd.1 | 3t5x.1 | 3tbl.1 | 3tmp.1 | 3tmp.2 | 3tmp.3 | 3tmp.4 | 3ugb.1 | 3unb.1 | 3unb.2 | 3une.1 | 3une.2 | 3unf.1 | 3unh.1 | 3vht.1 | 3vuw.1 | 3vuw.2 | 3vuw.3 | 3vux.1 | 3vux.2 | 3vux.3 | 3vuy.1 | 3vuy.2 | 3vuy.3 | 4bbn.1 | 4bos.1 | 4boz.1 | 4boz.2 | 4boz.3 | 4bvu.1 | 4ddg.1 | 4ddg.2 | 4ddi.1 | 4dhj.1 | 4dhj.2 | 4dhj.4 | 4dhj.5 | 4dhz.1 | 4jqw.1 | 4k7s.1 | 4k7s.2 | 4k7s.3 | 4k7u.1 | 4k7u.2 | 4k7u.3 | 4k7w.1 | 4k7w.2 | 4k7w.3 | 4ldt.1 | 4ljo.1 | 4ljp.1 | 4m0w.1 | 4mm3.1 | 4s1z.1 | 4s1z.2 | 4s1z.3 | 4s1z.4 | 4s1z.5 | 4s22.1 | 4s22.2 | 4un2.1 | 4wlr.1 | 4wur.1 | 4wzp.1 | 4wzp.2 | 4wzp.3 | 4wzp.4 | 4wzp.5 | 4wzp.6 | 4wzp.7 | 4wzp.8 | 4xkh.1 | 4xkh.2 | 4xkh.3 | 4xof.1 | 4xok.1 | 4xok.2 | 4xok.3 | 4xol.1 | 4xol.2 | 4xyz.1 | 4y1h.1 | 4z9s.1 | 4zux.1 | 4zux.2 | 5a0q.1 | 5a5b.1 | 5ait.1 | 5aiu.1 | 5bz0.1 | 5d0k.1 | 5d0k.2 | 5d0k.3 | 5d0k.4 | 5d0m.1 | 5dfl.1 | 5dsv.1 | 5edv.1 | 5edv.2 | 5edv.3 | 5eya.1 | 5fer.1 | 5gjq.1 | 5go7.1 | 5go8.1 | 5gob.1 | 5goc.1 | 5god.1 | 5gog.1 | 5goh.1 | 5goi.1 | 5goj.1 | 5gok.1 | 5h7s.1 | 5j8p.1 | 5jbv.1 | 5jby.1 | 5jqs.1 | 5jtj.1 | 5jtj.2 | 5jtv.1 | 5jtv.2 | 5jtv.3 | 5jtv.4 | 5jtv.5 | 5jtv.6 | 5jtv.7 | 5k9p.1 | 5kgf.1 | 5kyc.1 | 5kyd.1 | 5kye.1 | 5kye.2 | 5kyf.1 | 5l4g.1 | 5l4k.1 | 5le5.1 | 5lex.1 | 5ley.1 | 5lez.1 | 5lf0.1 | 5lf1.1 | 5lf3.1 | 5lf4.1 | 5lf6.1 | 5lf7.1 | 5ln3.1 | 5m32.1 | 5mn9.1 | 5nmc.1 | 5nmc.2 | 5nmc.3 | 5nvg.1 | 5ohl.1 | 5ohl.2 | 5ohl.3 | 5ohl.4 | 5ohl.5 | 5ohl.6 | 5ohl.7 | 5ohp.1 | 5ohv.1 | 5t0g.1 | 5t0h.1 | 5t0i.1 | 5t0j.1 | 5tut.1 | 5txk.1 | 5ujl.1 | 5ujn.1 | 5ulf.1 | 5ulf.2 | 5ulh.1 | 5ulk.1 | 5v1y.1 | 5v1y.2 | 5v1z.1 | 5v1z.2 | 5vey.1 | 5vf0.1 | 5vfp.1 | 5vfq.1 | 5vfr.1 | 5vfs.1 | 5vft.1 | 5vfu.1 | 5vgz.1 | 5vhf.1 | 5vhh.1 | 5vhi.1 | 5vhs.1 | 5vnz.1 | 5vnz.2 | 5vo0.1 | 5vzm.1 | 5wfi.1 | 5wfi.2 | 5x3m.1 | 5x3n.1 | 5x3o.1 | 5xbo.1 | 5xdp.2 | 5xiu.1 | 5xk4.1 | 5xk5.1 | 5xpk.1 | 5xu8.1 | 5xve.1 | 5ymy.1 | 5zbu.2 | 6aqr.1 | 6asr.1 | 6asr.2 | 6avo.1 | 6b7m.1 | 6b7o.1 | 6djx.1 | 6e2b.1 | 6e5b.1 | 6epc.1 | 6epd.1 | 6epe.1 | 6epf.1 | 6ftx.1 | 6if1.1 | 6if1.2 | 6isu.1 | 6jb6.1 | 6jb7.1 | 6jma.1 | 6jwi.1 | 6k9p.1 | 6kl4.1 | 6kow.1 | 6kox.1 | 6kwy.1 | 6lp2.1 | 6msb.1 | 6msd.1 | 6mse.1 | 6msg.1 | 6msh.1 | 6msj.1 | 6msk.1 | 6n13.1 | 6nxk.1 | 6nxk.2 | 6oi4.1 | 6oi4.2 | 6p5b.1 | 6q00.1 | 6q01.1 | 6q01.2 | 6qml.1 | 6qml.2 | 6rey.1 | 6rgq.1 | 6rya.1 | 6rya.2 | 6rya.3 | 6s53.1 | 6s53.2 | 6sqr.1 | 6t9l.1 | 6tbm.1 | 6tnf.1 | 6ttu.1 | 6tu3.1 | 6tuv.1 | 6tuv.2 | 6txb.1 | 6txb.2 | 6v5d.1 | 6vae.1 | 6vaf.1 | 6w9d.1 | 6w9d.2 | 6w9d.3 | 6wjd.1 | 6wjn.1 | 6wtg.1 | 6z7v.1 | 7bbd.1 | 7bbf.1 | 7cap.1 | 7dni.1 | 7dnj.1 | 7dr6.1 | 7dr7.1 | 7drw.1 | 7e55.1 | 7e55.2 | 7e55.3 | 7f0u.1 | 7f0u.2 | 7f7x.1 | 7jxv.1 | 7keo.1 | 7keo.2 | 7lxv.1 | 7m4m.1 | 7m4m.2 | 7m4n.1 | 7m4n.2 | 7m4o.1 | 7myf.2 | 7nan.1 | 7nao.1 | 7nap.1 | 7naq.1 | 7nht.1 | 7npi.1 | 7npi.2 | 7npi.3 | 7npi.4 | 7npi.5 | 7npi.6 | 7npi.7 | 7ojx.1 | 7owd.2 | 7pg9.1 | 7qo4.1 | 7qo5.1 | 7qo6.1 | 7qxn.1 | 7qxp.1 | 7qxu.1 | 7qxw.1 | 7qxx.1 | 7qy7.1 | 7qya.1 | 7qyb.1 | 7r71.1 | 7uv5.1 | 7uyh.1 | 7v5g.1 | 7v5m.1 | 7w37.1 | 7w38.1 | 7w39.1 | 7w3a.1 | 7w3b.1 | 7w3c.1 | 7w3f.1 | 7w3g.1 | 7w3h.1 | 7w3i.1 | 7w3j.1 | 7w3m.1 | 7xcr.1 | 7xct.1 | 7xd0.1 | 8azk.1 | 8b3g.1 | 8b3i.1 | 8bzl.1 | 8c07.1 | 8c83.1 | 8cah.1 | 8cas.1 | 8cvr.1 | 8cvs.1 | 8cvt.1 | 8cxb.1 | 8e7o.1 | 8eaz.1 | 8eaz.2 | 8eb0.1 | 8f1f.1 | 8f1f.2 | 8fz5.1 | 8fz6.1 | 8grm.1 | 8h1t.1 | 8ic9.1 | 8ic9.2 | 8itp.1 | 8itp.2 | 8j1p.1 | 8jri.1 | 8jrt.1 | 8off.1 | 8pjn.1 | 8pmq.1 | 8qyj.1 | 8qyl.1 | 8qym.1 | 8qyn.1 | 8qyo.1 | 8qys.1 | 8qz9.1 | 8rx0.1 | 8svf.1 | 8tm3.1 | 8tm4.1 | 8tm5.1 | 8tm6.1 | 8u5h.1 | 8ud9.1 | 8usb.1 | 8usc.1 | 8usd.1 | 8xep.1 | 8ypk.1 | 8ysx.1 | 8yvg.1 | 8yvp.1 | 9avt.1 | 9d1i.1 | 9e8g.1 | 9e8h.1 | 9e8i.1 | 9e8j.1 | 9e8k.1 | 9e8l.1 | 9e8n.1 | 9e8o.1 | 9e8q.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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