SMTL ID : 2zxz.1

Crystal structure of the human RXR alpha ligand binding domain bound to a synthetic agonist compound and a coactivator peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x P26: 4-[2-(1,1,3,3-tetramethyl-2,3-dihydro-1H-inden-5-yl)-1,3-dioxolan-2-yl]benzoic acid(Non-covalent)

P26.1: 18 residues within 4Å: Chain A: V.43, I.46, A.49, A.50, Q.53, W.83, N.84, L.87, I.88, F.91, R.94, L.104, A.105, V.127, C.210, H.213, L.214, F.217 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.43, A:I.46, A:I.46, A:A.50, A:L.87, A:F.91, A:F.91, A:L.104, A:V.127, A:H.213, A:L.214, A:F.217 Hydrogen bonds: A:A.105 Salt bridges: A:R.94 P26.2: 18 residues within 4Å: Chain C: V.43, I.46, A.49, A.50, Q.53, W.83, N.84, L.87, I.88, F.91, R.94, L.104, A.105, V.127, C.210, H.213, L.214, F.217 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:V.43, C:I.46, C:I.46, C:A.50, C:L.87, C:F.91, C:F.91, C:L.104, C:V.127, C:H.213, C:L.214, C:F.217 Hydrogen bonds: C:A.105 Salt bridges: C:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lippert, W.P. et al., Silicon analogues of the RXR-selective retinoid agonist SR11237 (BMS649): chemistry and biology. Chemmedchem (2009)

Release Date

2009-08-11

Peptides

Retinoic acid receptor RXR-alpha: AC
GRIP1 from Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

GRIP1 from Nuclear receptor coactivator 2

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