SMTL ID : 2zy0.1

Crystal structure of the human RXR alpha ligand binding domain bound to a synthetic agonist compound and a coactivator peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 21P: 4-[2-(1,1,3,3-tetramethyl-2,3-dihydro-1H-1,3-benzodisilol-5-yl)-1,3-dioxolan-2-yl]benzoic acid(Non-covalent)

21P.1: 21 residues within 4Å: Chain A: V.43, I.46, A.49, A.50, Q.53, W.83, N.84, L.87, I.88, F.91, R.94, I.102, L.104, A.105, I.123, F.124, V.127, C.210, H.213, L.214, F.217 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.46, A:A.50, A:L.87, A:F.91, A:F.91, A:L.104, A:L.214 Hydrogen bonds: A:A.105 Water bridges: A:F.91 Salt bridges: A:R.94 21P.2: 21 residues within 4Å: Chain C: V.43, I.46, A.49, A.50, Q.53, W.83, N.84, L.87, I.88, F.91, R.94, I.102, L.104, A.105, I.123, F.124, V.127, C.210, H.213, L.214, F.217 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:I.46, C:A.50, C:L.87, C:F.91, C:F.91, C:L.104 Hydrogen bonds: C:A.105 Salt bridges: C:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lippert, W.P. et al., Silicon analogues of the RXR-selective retinoid agonist SR11237 (BMS649): chemistry and biology. Chemmedchem (2009)

Release Date

2009-08-11

Peptides

Retinoic acid receptor RXR-alpha: AC
GRIP1 from Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Retinoic acid receptor RXR-alpha

GRIP1 from Nuclear receptor coactivator 2

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