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SMTL ID : 9qni.1

NOTCH4 phosphopeptide binding to 14-3-3sigma

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x ALA- ARG- THR- VAL- SEP- VAL- SER: NOTCH4 pS1847 peptide(Non-covalent)

ALA-ARG-THR-VAL-SEP-VAL-SER.1:	12 residues within 4Å: Chain A: K.54, R.61, K.127, R.134, Y.135, L.179, N.180, V.183, E.187, N.231, L.234, W.235 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.179, A:V.183, A:L.234, A:W.235 Hydrogen bonds: A:N.180, A:N.180, A:N.231, A:N.231 Water bridges: A:K.54, A:K.54, A:R.61, A:R.61, A:R.61 Salt bridges: A:K.54, A:R.61, A:R.134
ALA-ARG-THR-VAL-SEP-VAL-SER.7:	12 residues within 4Å: Chain B: K.54, R.61, K.127, R.134, Y.135, L.179, N.180, V.183, E.187, N.231, L.234, W.235 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:L.179, B:V.183, B:L.234, B:W.235 Hydrogen bonds: B:Y.135, B:N.180, B:N.180, B:E.187, B:E.187, B:N.231, B:N.231 Water bridges: B:K.54, B:K.54, B:R.61, B:R.61, B:R.61 Salt bridges: B:K.54, B:R.61, B:R.134

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2:	4 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain B: K.14 Ligand excluded by PLIP
CL.8:	4 residues within 4Å: Chain A: K.14 Chain B: E.88, Y.89, K.92 Ligand excluded by PLIP

8 x CA: CALCIUM ION(Non-covalent)

CA.3:	2 residues within 4Å: Chain A: E.40, E.115 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.40, A:E.40, A:E.115, H₂O.4, H₂O.5
CA.4:	1 residues within 4Å: Chain A: E.80 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.80
CA.5:	1 residues within 4Å: Chain A: E.94 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.94
CA.6:	1 residues within 4Å: Chain A: E.7 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.7, H₂O.1, H₂O.4
CA.9:	2 residues within 4Å: Chain B: E.40, E.115 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.40, B:E.40, B:E.115, H₂O.8, H₂O.9
CA.10:	1 residues within 4Å: Chain B: E.80 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.80
CA.11:	1 residues within 4Å: Chain B: E.94 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.94
CA.12:	1 residues within 4Å: Chain B: E.7 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.7, H₂O.6, H₂O.9

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

van Weesep, L. et al., Identifying 14-3-3 interactome binding sites with deep learning. Digit Discov (2025)

Release Date

2025-09-03

Peptides

14-3-3 protein sigma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AB)

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