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SMTL ID : 9qnl.1

BAD pS118 phosphopeptide binding to 14-3-3sigma

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

hetero-2-2-mer

Ligands

10 x CA: CALCIUM ION(Non-covalent)

CA.1:	1 residues within 4Å: Chain A: E.166 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.166, H₂O.3, H₂O.5, H₂O.5, H₂O.8
CA.2:	2 residues within 4Å: Chain A: E.40, E.115 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.40, A:E.115, H₂O.2, H₂O.7, H₂O.8
CA.3:	1 residues within 4Å: Chain A: E.94 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.94, H₂O.1, H₂O.2, H₂O.6
CA.4:	1 residues within 4Å: Chain A: G.4 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.4, H₂O.5
CA.5:	1 residues within 4Å: Chain A: E.7 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.7, H₂O.1, H₂O.7
CA.7:	1 residues within 4Å: Chain C: E.166 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:E.166, H₂O.13, H₂O.14, H₂O.14, H₂O.17
CA.8:	2 residues within 4Å: Chain C: E.40, E.115 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.40, C:E.115, H₂O.11, H₂O.16, H₂O.17
CA.9:	1 residues within 4Å: Chain C: E.94 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.94, H₂O.10, H₂O.11, H₂O.16
CA.10:	1 residues within 4Å: Chain C: G.4 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:G.4, H₂O.14
CA.11:	1 residues within 4Å: Chain C: E.7 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.7, H₂O.11, H₂O.16

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6:	4 residues within 4Å: Chain A: K.14 Chain C: E.88, Y.89, K.92 Ligand excluded by PLIP
CL.12:	4 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: K.14 Ligand excluded by PLIP

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

van Weesep, L. et al., Identifying 14-3-3 interactome binding sites with deep learning. Digit Discov (2025)

Release Date

2025-09-03

Peptides

14-3-3 protein sigma: AC
Bcl2-associated agonist of cell death: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

Bcl2-associated agonist of cell death

Toggle Identical (BD)

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