SMTL ID : 6lb6.1

Crystal structure of dimeric RXR-LBD complexed with partial agonist NEt-4IB and TIF2 co-activator

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x E8O: 6-[ethyl-[4-(2-methylpropoxy)-3-propan-2-yl-phenyl]amino]pyridine-3-carboxylic acid(Non-covalent)

E8O.1: 17 residues within 4Å: Chain A: V.46, I.49, A.52, A.53, Q.56, N.87, L.90, I.91, F.94, R.97, I.105, L.107, A.108, V.123, C.213, H.216, F.220 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.46, A:I.49, A:I.49, A:I.49, A:A.52, A:A.53, A:L.90, A:I.91, A:F.94, A:F.94, A:I.105, A:V.123, A:H.216, A:F.220 Hydrogen bonds: A:Q.56, A:A.108 Salt bridges: A:R.97 pi-Stacking: A:F.94 E8O.2: 17 residues within 4Å: Chain C: V.46, I.49, A.52, A.53, Q.56, N.87, L.90, I.91, F.94, R.97, I.105, L.107, A.108, V.123, C.213, H.216, F.220 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:V.46, C:I.49, C:I.49, C:I.49, C:A.52, C:A.53, C:L.90, C:I.91, C:F.94, C:F.94, C:I.105, C:V.123, C:H.216, C:F.220 Hydrogen bonds: C:Q.56, C:A.108 Salt bridges: C:R.97 pi-Stacking: C:F.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imai, D. et al., Structural basis for the full and partial agonist activities of retinoid X receptor alpha ligands with an iso-butoxy and an isopropyl group. Biochem.Biophys.Res.Commun. (2024)

Release Date

2020-11-18

Peptides

Retinoic acid receptor RXR-alpha: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

Related Entries With Identical Sequence