SMTL ID : 7q2j.1

Quaternary Complex of human WDR5 and pVHL:ElonginC:ElonginB bound to PROTAC Homer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 8KH: N-[5-[4-[[5-[[(2S)-3,3-dimethyl-1-[(2S,4R)-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]amino]-5-oxidanylidene-pentyl]carbamoyl]phenyl]-2-(4-methylpiperazin-1-yl)phenyl]-6-oxidanylidene-4-(trifluoromethyl)-1H-pyridine-3-carboxamide(Non-covalent)

8KH.1: 31 residues within 4Å: Chain C: N.51, F.60, P.70, W.72, F.75, Y.82, P.83, L.85, R.91, I.93, H.94, S.95, Y.96, H.99, W.101 Chain D: S.27, S.28, A.43, G.67, I.68, S.69, D.70, D.85, F.111, F.127, S.153, Y.169, C.239, F.241, I.283, L.299 17 PLIP interactions: 11 interactions with chain C, 6 interactions with chain D Hydrophobic interactions: C:W.72, C:I.93, C:I.93, C:Y.96, C:W.101, D:F.111, D:Y.169, D:Y.169 Hydrogen bonds: C:R.91, C:H.94, C:S.95, C:Y.96, C:H.99, D:S.69 pi-Stacking: C:Y.82, D:F.111 Salt bridges: D:D.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kraemer, A. et al., Quaternary Complex of human WDR5 and pVHL:ElonginC:ElonginB bound to PROTAC Homer. To Be Published

Release Date

2021-11-24

Peptides

Elongin-B: A
Elongin-C: B
von Hippel-Lindau disease tumor suppressor: C
WD repeat-containing protein 5: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Elongin-B

Elongin-C

von Hippel-Lindau disease tumor suppressor

WD repeat-containing protein 5

Related Entries With Identical Sequence