SMTL ID : 8zdc.1

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-mer
Ligands
2 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Huang, Z. et al., RIOK3 mediates the degradation of 40S ribosomes. Mol.Cell (2025)
Release Date
2025-02-12
Peptides
Small ribosomal subunit protein eS17: B
Small ribosomal subunit protein uS2: C
Small ribosomal subunit protein eS1: D
Small ribosomal subunit protein uS5: E
Small ribosomal subunit protein eS4, X isoform: F
Small ribosomal subunit protein eS6: G
Small ribosomal subunit protein eS7: H
Small ribosomal subunit protein eS8: I
Small ribosomal subunit protein uS4: J
Small ribosomal subunit protein uS17: K
Small ribosomal subunit protein uS15: L
Small ribosomal subunit protein uS11: M
Small ribosomal subunit protein eS21: N
Small ribosomal subunit protein uS8: O
Small ribosomal subunit protein uS12: P
Small ribosomal subunit protein eS24: Q
Small ribosomal subunit protein eS27: R
RNA-binding protein PNO1: S
RNA-binding protein NOB1: T
Pre-rRNA-processing protein TSR1 homolog: U
Protein LTV1 homolog: V
Small ribosomal subunit protein uS14: W
Small ribosomal subunit protein uS3: X
Small ribosomal subunit protein uS7: Y
Small ribosomal subunit protein eS10: Z
Small ribosomal subunit protein eS12: 0
Small ribosomal subunit protein uS19: 1
Small ribosomal subunit protein uS9: 2
Small ribosomal subunit protein uS13: 3
Small ribosomal subunit protein eS19: 4
Small ribosomal subunit protein uS10: 5
Small ribosomal subunit protein eS25: 6
Small ribosomal subunit protein eS28: 7
Small ribosomal subunit protein RACK1: 8
Serine/threonine-protein kinase RIO3: 9
Ubiquitin: ab
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
B
R
C
A
D
B
E
C
F
E
G
G
H
H
I
I
J
J
K
L
L
N
M
O
N
V
O
W
P
X
Q
Y
R
b
S
x
T
y
U
u
V
t
W
d
X
D
Y
F
Z
K
0
M
1
P
2
Q
3
S
4
T
5
U
6
Z
7
c
8
g
9
p
a
i
b
j

Small ribosomal subunit protein eS17

Small ribosomal subunit protein uS2

Small ribosomal subunit protein eS1

Small ribosomal subunit protein uS5

Small ribosomal subunit protein eS4, X isoform

Small ribosomal subunit protein eS6

Small ribosomal subunit protein eS7

Small ribosomal subunit protein eS8

Small ribosomal subunit protein uS4

Small ribosomal subunit protein uS17

Small ribosomal subunit protein uS15

Small ribosomal subunit protein uS11

Small ribosomal subunit protein eS21

Small ribosomal subunit protein uS8

Small ribosomal subunit protein uS12

Small ribosomal subunit protein eS24

Small ribosomal subunit protein eS27

RNA-binding protein PNO1

RNA-binding protein NOB1

Pre-rRNA-processing protein TSR1 homolog

Protein LTV1 homolog

Small ribosomal subunit protein uS14

Small ribosomal subunit protein uS3

Small ribosomal subunit protein uS7

Small ribosomal subunit protein eS10

Small ribosomal subunit protein eS12

Small ribosomal subunit protein uS19

Small ribosomal subunit protein uS9

Small ribosomal subunit protein uS13

Small ribosomal subunit protein eS19

Small ribosomal subunit protein uS10

Small ribosomal subunit protein eS25

Small ribosomal subunit protein eS28

Small ribosomal subunit protein RACK1

Serine/threonine-protein kinase RIO3

Ubiquitin

Toggle Identical (ab)

Related Entries With Identical Sequence

1aar.1 | 1cmx.1 | 1d3z.1 | 1f9j.1 | 1fxt.1 | 1g6j.1 | 1nbf.1 | 1nbf.2 | 1ogw.1 | 1p3q.1 | 1p3q.2 | 1q5w.1 | 1s1q.1 | 1s1q.2 | 1tbe.1 | 1ubi.1 | 1ubq.1 | 1uzx.1 | 1v80.1 | 1v81.1 | 1wr6.1 | 1wr6.2 | 1wr6.3 | 1wr6.4 | 1wrd.1 | 1wrd.2 | 1xqq.1 | 1yd8.1 | 1yd8.2 | 2ayo.1  more...