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SMTL ID : 6fbb.1

Crystal structure of 14-3-3 sigma in complex with wild-type Shroom3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

2 x SER- ARG- SEP- SER- PRO: Shroom3(Non-covalent)

SER-ARG-SEP-SER-PRO.1:

18 residues within 4Å:

Chain A: K.54, R.61, K.127, R.134, Y.135, G.176, L.179, N.180, V.183, Y.186, E.187, L.223, I.224, L.227, D.230, N.231, L.234, W.235

18 PLIP interactions:

18 interactions with chain A

Hydrogen bonds: A:Y.135, A:N.180, A:N.180, A:N.180, A:E.187, A:E.187, A:N.231, A:N.231, A:W.235
Water bridges: A:K.54, A:K.54, A:R.61, A:R.61, A:R.61, A:R.61, A:N.180
Salt bridges: A:R.61, A:R.134

SER-ARG-SEP-SER-PRO.6:

18 residues within 4Å:

Chain B: K.54, R.61, K.127, R.134, Y.135, G.176, L.179, N.180, V.183, Y.186, E.187, L.223, I.224, L.227, D.230, N.231, L.234, W.235

19 PLIP interactions:

19 interactions with chain B

Hydrogen bonds: B:Y.135, B:N.180, B:N.180, B:N.180, B:E.187, B:E.187, B:E.187, B:N.231, B:N.231, B:W.235
Water bridges: B:K.54, B:K.54, B:R.61, B:R.61, B:R.61, B:R.61, B:N.180
Salt bridges: B:R.61, B:R.134

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2:	1 residues within 4Å: Chain A: E.7 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.7, H₂O.1
MG.3:	4 residues within 4Å: Chain A: E.40, E.115, A.116, G.117 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.40, A:E.40, A:E.115, H₂O.7, H₂O.8
MG.7:	1 residues within 4Å: Chain B: E.7 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.7, H₂O.13
MG.8:	4 residues within 4Å: Chain B: E.40, E.115, A.116, G.117 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.40, B:E.40, B:E.115, H₂O.19, H₂O.20

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4:	6 residues within 4Å: Chain A: M.6, K.14, F.30 Chain B: E.88, Y.89, K.92 Ligand excluded by PLIP
CL.5:	3 residues within 4Å: Chain A: D.161, K.164, K.165 Ligand excluded by PLIP
CL.9:	6 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain B: M.6, K.14, F.30 Ligand excluded by PLIP
CL.10:	3 residues within 4Å: Chain B: D.161, K.164, K.165 Ligand excluded by PLIP

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Prokop, J.W. et al., Characterization of Coding/Noncoding Variants forSHROOM3in Patients with CKD. J. Am. Soc. Nephrol. (2018)

Release Date

2018-03-14

Peptides

14-3-3 protein sigma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AB)

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