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SMTL ID : 6qdt.1

Crystal structure of 14-3-3sigma in complex with a RapGef2 pT740 phosphopeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1:	4 residues within 4Å: Chain A: E.40, E.115, A.116, G.117 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.40, A:E.40, A:E.115, H₂O.8, H₂O.10
CA.8:	4 residues within 4Å: Chain C: E.40, E.115, A.116, G.117 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.40, C:E.40, C:E.115, H₂O.24, H₂O.26

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2:	6 residues within 4Å: Chain A: M.6, K.14, F.30 Chain C: E.88, Y.89, K.92 Ligand excluded by PLIP
CL.9:	6 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: M.6, K.14, F.30 Ligand excluded by PLIP

10 x NA: SODIUM ION(Non-functional Binders)

NA.3:	2 residues within 4Å: Chain A: T.233, T.236 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.233
NA.4:	2 residues within 4Å: Chain A: E.166, M.167 No protein-ligand interaction detected (PLIP)
NA.5:	1 residues within 4Å: Chain A: E.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.7
NA.6:	4 residues within 4Å: Chain A: G.38, E.39, E.40, E.115 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.40 Water bridges: A:G.38, A:E.39, A:E.39, A:E.39, A:E.40, A:E.40
NA.7:	4 residues within 4Å: Chain A: K.82, G.83, E.85 Chain C: Q.13 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.13
NA.10:	2 residues within 4Å: Chain C: T.233, T.236 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.236
NA.11:	2 residues within 4Å: Chain C: E.166, M.167 1 PLIP interactions: 1 interactions with chain C Water bridges: C:E.166
NA.12:	1 residues within 4Å: Chain C: E.7 No protein-ligand interaction detected (PLIP)
NA.13:	4 residues within 4Å: Chain C: G.38, E.39, E.40, E.115 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.38, C:E.40 Water bridges: C:E.40, C:E.40
NA.14:	4 residues within 4Å: Chain A: Q.13 Chain C: K.82, G.83, E.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.13

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kaplan, A. et al., Polypharmacological Perturbation of the 14-3-3 Adaptor Protein Interactome Stimulates Neurite Outgrowth. Cell Chem Biol (2020)

Release Date

2020-01-29

Peptides

14-3-3 protein sigma: AC
Rap guanine nucleotide exchange factor 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

Rap guanine nucleotide exchange factor 2

Toggle Identical (BD)

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