6yia.1 | SWISS-MODEL Template Library

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SMTL ID : 6yia.1

14-3-3 sigma in complex with SMAD2 pS465 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

hetero-2-2-mer

Ligands

10 x MG: MAGNESIUM ION(Non-covalent)

MG.1:	5 residues within 4Å: Chain A: W.64, R.90, E.94, V.139, T.141 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.94, A:V.139, H₂O.7, H₂O.13
MG.2:	1 residues within 4Å: Chain A: E.80 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.80, H₂O.10, H₂O.10, H₂O.12, H₂O.13
MG.3:	1 residues within 4Å: Chain A: E.7 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.7, H₂O.8, H₂O.10, H₂O.10
MG.4:	4 residues within 4Å: Chain A: R.23, Y.24, E.25, D.26 No protein-ligand interaction detected (PLIP)
MG.5:	3 residues within 4Å: Chain A: K.129, S.154, A.155 No protein-ligand interaction detected (PLIP)
MG.10:	5 residues within 4Å: Chain C: W.64, R.90, E.94, V.139, T.141 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.94, C:V.139, H₂O.22, H₂O.28
MG.11:	1 residues within 4Å: Chain C: E.80 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:E.80, H₂O.25, H₂O.25, H₂O.27, H₂O.28
MG.12:	1 residues within 4Å: Chain C: E.7 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.7, H₂O.23, H₂O.25, H₂O.25
MG.13:	4 residues within 4Å: Chain C: R.23, Y.24, E.25, D.26 No protein-ligand interaction detected (PLIP)
MG.14:	3 residues within 4Å: Chain C: K.129, S.154, A.155 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
GOL.15:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7:	4 residues within 4Å: Chain A: K.14 Chain C: E.88, Y.89, K.92 Ligand excluded by PLIP
CL.16:	4 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: K.14 Ligand excluded by PLIP

2 x CA: CALCIUM ION(Non-covalent)

CA.8:	1 residues within 4Å: Chain A: E.193 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.193, H₂O.7, H₂O.10, H₂O.13
CA.17:	1 residues within 4Å: Chain C: E.193 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.193, H₂O.22, H₂O.25, H₂O.28

2 x NA: SODIUM ION(Non-functional Binders)

NA.9:	1 residues within 4Å: Chain A: S.151 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.129, A:K.129, A:Y.133, A:Y.133
NA.18:	1 residues within 4Å: Chain C: S.151 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.151 Water bridges: C:K.129, C:S.151

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Graf, S. et al., Identification and characterization of 14-3-3/SMAD protein-protein-interactions. To Be Published

Release Date

2021-04-14

Peptides

14-3-3 protein sigma: AC
SMAD2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
P

D
P

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

SMAD2

Toggle Identical (BD)

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