SMTL ID : 3o1d.1

Structure-function study of Gemini derivatives with two different side chains at C-20, Gemini-0072 and Gemini-0097.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x G72: (1R,3R,7E,17beta)-17-[(1S)-6,6,6-trifluoro-5-hydroxy-1-(4-hydroxy-4-methylpentyl)-5-(trifluoromethyl)hex-3-yn-1-yl]-9,10-secoestra-5,7-diene-1,3-diol(Non-covalent)

G72.1: 26 residues within 4Å: Chain A: Y.24, Y.28, L.104, L.110, V.111, S.114, I.145, M.149, R.151, S.152, S.155, W.163, C.165, V.177, A.180, H.182, L.186, L.187, L.190, L.268, H.272, Y.276, L.279, L.289, V.293, F.297 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.110, A:V.111, A:I.145, A:W.163, A:W.163, A:V.177, A:L.187, A:L.190, A:L.268 Hydrogen bonds: A:Y.24, A:Y.24, A:S.114, A:R.151, A:S.155, A:H.182, A:H.182 G72.2: 26 residues within 4Å: Chain C: Y.24, Y.28, L.104, L.110, V.111, S.114, I.145, M.149, R.151, S.152, S.155, W.163, C.165, V.177, A.180, H.182, L.186, L.187, L.190, L.268, H.272, Y.276, L.279, L.289, V.293, F.297 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:L.110, C:V.111, C:I.145, C:W.163, C:W.163, C:V.177, C:L.187, C:L.190, C:L.268 Hydrogen bonds: C:Y.24, C:S.114, C:R.151, C:S.155, C:H.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huet, T. et al., Structure-function study of gemini derivatives with two different side chains at C-20, Gemini-0072 and Gemini-0097. Medchemcomm (2011)

Release Date

2011-07-06

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D3 receptor A

Nuclear receptor coactivator 2

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