SMTL ID : 6ftx.1

Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.50 Å

Oligo State

hetero-1-2-2-2-1-2-1-mer

Ligands

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.1: 4 residues within 4Å: Chain M: T.254, I.583, R.609 Ligands: ADP.2 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 10 residues within 4Å: Chain M: L.194, Q.198, G.222, G.224, K.225, V.227, N.584, M.586, R.612 Ligands: BEF.1 7 PLIP interactions: 7 interactions with chain M Hydrogen bonds: M:G.222, M:G.224, M:K.225, M:I.583, M:N.584 Salt bridges: M:R.612, M:R.612

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sundaramoorthy, R. et al., Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome. Elife (2018)

Release Date

2018-08-08

Peptides

Histone H3: A
Histone H4: BF
Histone H2A type 1: CG
Histone H2B: DH
Histone H3.3C: E
Polyubiquitin-B: KL
Chromatin-remodeling ATPase: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

F
F

C
C

G
G

D
D

H
H

E
E

K
N

L
O

M
W

Histone H3

Histone H4

Histone H2A type 1

Histone H2B

Histone H3.3C

Polyubiquitin-B

Chromatin-remodeling ATPase

Related Entries With Identical Sequence