SMTL ID : 2zfp.1

Thrombin Inibition

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain B: R.233, K.236 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.236, B:K.236 Water bridges: B:D.232, B:R.233 NA.2: 2 residues within 4Å: Chain B: K.174, T.177 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.177

1 x 19U: 1-[(2R)-2-aminobutanoyl]-N-(3-chlorobenzyl)-L-prolinamide(Non-covalent)

19U.3: 15 residues within 4Å: Chain B: H.43, Y.47, W.50, L.96, D.199, A.200, C.201, S.205, V.225, S.226, W.227, G.228, G.230, G.238, F.239 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.47, B:L.96, B:V.225 Hydrogen bonds: B:S.226, B:G.228, B:G.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baum, B. et al., Think twice: understanding the high potency of bis(phenyl)methane inhibitors of thrombin. J.Mol.Biol. (2009)

Release Date

2008-12-16

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Hirudin variant-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Thrombin light chain

Thrombin heavy chain

Hirudin variant-1

Related Entries With Identical Sequence