SMTL ID : 4dih.1

X-ray structure of the complex between human alpha thrombin and thrombin binding aptamer in the presence of sodium ions

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
hetero-1-1-mer
Ligands
3 x ZN: ZINC ION(Non-covalent)
1 x 0G6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide(Covalent)
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
2 x NA: SODIUM ION(Non-functional Binders)
2 x CL: CHLORIDE ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Russo Krauss, I. et al., High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity. Nucleic Acids Res. (2012)
Release Date
2012-07-18
Peptides
Prothrombin: A
Prothrombin: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
L
B
H

Prothrombin

Prothrombin

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