SMTL ID : 1a3b.1

COMPLEX OF HUMAN ALPHA-THROMBIN WITH THE BIFUNCTIONAL BORONATE INHIBITOR BOROLOG1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x T29: TRI166 (BIFUNCTIONAL BORONATE INHIBITOR)(Covalent)

T29.1: 20 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, L.96, I.179, D.199, A.200, C.201, E.202, G.203, D.204, S.205, S.226, W.227, G.228, G.230, C.231, G.238 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:L.96, B:L.96, B:I.179, B:W.227 Hydrogen bonds: B:D.199, B:D.199, B:A.200, B:E.202, B:G.203, B:D.204, B:S.205, B:S.226, B:G.228, B:G.228 Water bridges: B:D.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skordalakes, E. et al., Bifunctional peptide boronate inhibitors of thrombin: crystallographic analysis of inhibition enhanced by linkage to an exosite 1 binding peptide. Biochemistry (1998)

Release Date

1998-06-03

Peptides

ALPHA-THROMBIN (SMALL SUBUNIT): A
ALPHA-THROMBIN (LARGE SUBUNIT): B
Hirudin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

ALPHA-THROMBIN (SMALL SUBUNIT)

ALPHA-THROMBIN (LARGE SUBUNIT)

Hirudin

Related Entries With Identical Sequence