SMTL ID : 2fes.1

Orally active thrombin inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 3SP: N-(CARBOXYMETHYL)-3-CYCLOHEXYL-D-ALANYL-N-({5-[(E)-AMINO(IMINO)METHYL]THIEN-2-YL}METHYL)-L-PROLINAMIDE(Non-covalent)

3SP.1: 16 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, L.96, D.199, A.200, S.205, V.225, S.226, W.227, G.228, E.229, G.230, G.238 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.227 Hydrogen bonds: B:D.199, B:A.200, B:S.226, B:G.228, B:G.228, B:G.228, B:G.230, B:G.230 Water bridges: B:F.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mack, H. et al., Orally active thrombin inhibitors. Part 1: optimization of the P1-moiety. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-05-09

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Decapeptide Hirudin Analogue: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
D

Thrombin light chain

Thrombin heavy chain

Decapeptide Hirudin Analogue

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