SMTL ID : 1o0d.2 (1 other biounit)

Human Thrombin complexed with a d-Phe-Pro-Arg-type Inhibitor and a C-terminal Hirudin derived exo-site inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x 163: (2-{2-[(5-CARBAMIMIDOYL-1-METHYL-1H-PYRROL-2-YLMETHYL)-CARBAMOYL]-PYRROL-1-YL}- 1-CYCLOHEXYLMETHYL-2-OXO-ETHYLAMINO)-ACETIC ACID(Non-covalent)

163.1: 17 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, L.96, D.199, A.200, C.201, E.202, S.205, V.225, S.226, W.227, G.228, E.229, G.230, C.231 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:L.96 Hydrogen bonds: B:D.199, B:A.200, B:S.226, B:G.228, B:G.228, B:E.229, B:G.230, B:G.230 Water bridges: B:R.233, B:F.239 163.2: 17 residues within 4Å: Chain E: H.43, Y.47, W.50, E.94, L.96, D.199, A.200, C.201, E.202, S.205, V.225, S.226, W.227, G.228, E.229, G.230, C.231 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:Y.47, E:W.50, E:L.96 Hydrogen bonds: E:D.199, E:A.200, E:S.226, E:G.228, E:G.228, E:E.229, E:G.230, E:G.230 Water bridges: E:R.233, E:F.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lange, U.E. et al., D-Phe-Pro-Arg type thrombin inhibitors: unexpected selectivity by modification of the P1 moiety. Bioorg.Med.Chem.Lett. (2003)

Release Date

2003-10-14

Peptides

Thrombin light chain: AD
Thrombin heavy chain: BE
Decapeptide Hirudin Analogue: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

D
L

B
H

E
H

C
D

F
D

Thrombin light chain

Thrombin heavy chain

Decapeptide Hirudin Analogue

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