SMTL ID : 6gn7.1

X-ray structure of the complex between human alpha thrombin and NU172, a duplex/quadruplex 26-mer DNA aptamer, in the presence of sodium ions.

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.80 Å
Oligo State
hetero-1-1-mer
Ligands
1 x 0G6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide(Covalent)
2 x NA: SODIUM ION(Non-functional Binders)
3 x NAG: N-ACETYL-D-GLUCOSAMINE(Post Translational Modification)(Non-functional Binders)
1 x BMA: BETA-D-MANNOSE(Non-functional Binders)
1 x MAN: ALPHA-D-MANNOSE(Non-functional Binders)
1 x GAL: BETA-D-GALACTOSE(Non-functional Binders)
1 x SIA: O-SIALIC ACID(Non-functional Binders)
1 x GOL: GLYCEROL(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Troisi, R. et al., Several structural motifs cooperate in determining the highly effective anti-thrombin activity of NU172 aptamer. Nucleic Acids Res. (2018)
Peptides
Prothrombin: A
Prothrombin: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
L
B
H

Prothrombin

Prothrombin

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