SMTL ID : 2feq.2 (1 other biounit)

orally active thrombin inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x 34P: N-(CARBOXYMETHYL)-3-CYCLOHEXYL-D-ALANYL-N-({4-[(E)-AMINO(IMINO)METHYL]-1,3-THIAZOL-2-YL}METHYL)-L-PROLINAMIDE(Non-covalent)

34P.1: 14 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, D.199, A.200, S.205, S.226, W.227, G.228, E.229, G.230, C.231, G.238 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.50, B:W.227 Hydrogen bonds: B:D.199, B:A.200, B:S.226, B:G.228, B:G.230, B:G.230 Water bridges: B:F.239 34P.2: 14 residues within 4Å: Chain E: H.43, Y.47, W.50, E.94, D.199, A.200, S.205, S.226, W.227, G.228, E.229, G.230, C.231, G.238 9 PLIP interactions: 9 interactions with chain E Hydrophobic interactions: E:W.50, E:W.227 Hydrogen bonds: E:D.199, E:A.200, E:S.226, E:G.228, E:G.230, E:G.230 Water bridges: E:F.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mack, H. et al., Orally active thrombin inhibitors. Part 1: optimization of the P1-moiety. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-08-08

Peptides

Thrombin light chain: AD
Thrombin heavy chain: BE
Decapeptide Hirudin Analogue: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

D
L

B
H

E
H

C
D

F
D

Thrombin light chain

Thrombin heavy chain

Decapeptide Hirudin Analogue

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