SMTL ID : 1hut.1

THE STRUCTURE OF ALPHA-THROMBIN INHIBITED BY A 15-MER SINGLE-STRANDED DNA APTAMER

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 0G7: D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide(Non-covalent)

0G7.1: 14 residues within 4Å: Chain C: H.43, Y.47, W.50, N.95, L.96, I.179, D.199, A.200, C.201, S.205, S.226, W.227, G.228, C.231 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:Y.47, C:W.50, C:L.96, C:L.96, C:L.96, C:I.179, C:W.227, C:W.227 Hydrogen bonds: C:A.200, C:S.205, C:G.228, C:G.228 Water bridges: C:E.202 Salt bridges: C:D.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Padmanabhan, K. et al., The structure of alpha-thrombin inhibited by a 15-mer single-stranded DNA aptamer. J.Biol.Chem. (1993)

Release Date

1994-06-22

Peptides

ALPHA-Thrombin light chain: B
ALPHA-Thrombin heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
L

C
H

ALPHA-Thrombin light chain

ALPHA-Thrombin heavy chain

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