SMTL ID : 5l6n.1

Disulfated madanin-thrombin complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain B: L.46, N.53, T.55 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.46 Hydrogen bonds: B:N.53

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain B: R.233, K.236 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.233, B:K.236 Water bridges: B:D.234, B:G.235, B:G.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, R.E. et al., Tyrosine sulfation modulates activity of tick-derived thrombin inhibitors. Nat Chem (2017)

Release Date

2017-03-29

Peptides

Prothrombin: A
Prothrombin: B
Thrombin inhibitor madanin 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Prothrombin

Prothrombin

Thrombin inhibitor madanin 1

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