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SMTL ID : 6gwe.1 (1 other biounit)

Crystal structure of Thrombin bound to P2 macrocycle

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
hetero-1-1-mer
Ligands
1 x ODB: (10S,14S,17R)-14-(3-carbamimidamidopropyl)-3-[[2-(hydroxymethyl)phenyl]methyl]-5,12,15-tris(oxidanylidene)-19-thia-3,6,13,16-tetrazatricyclo[19.4.0.0^{6,10}]pentacosa-1(21),22,24-triene-17-carboxamide(Non-covalent)
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
1 x NA: SODIUM ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kale, S.S. et al., Thiol-to-amine cyclization reaction enables screening of large libraries of macrocyclic compounds and the generation of sub-kilodalton ligands. Sci Adv (2019)
Release Date
2019-09-25
Peptides
Thrombin heavy chain: A
Thrombin light chain: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

Thrombin heavy chain

Thrombin light chain

Related Entries With Identical Sequence

1a2c.1 | 1a3b.1 | 1a3e.1 | 1a46.1 | 1a4w.1 | 1a5g.1 | 1a61.1 | 1abi.1 | 1abj.1 | 1ad8.1 | 1ae8.1 | 1afe.1 | 1aht.1 | 1ai8.1 | 1aix.1 | 1awf.1 | 1awh.1 | 1awh.2 | 1ay6.1 | 1b5g.1 | 1b7x.1 | 1ba8.1 | 1bb0.1 | 1bcu.1 | 1bmm.1 | 1bmn.1 | 1bth.1 | 1bth.2 | 1c1u.1 | 1c1v.1  more...