SMTL ID : 6gwe.1 (1 other biounit)

Crystal structure of Thrombin bound to P2 macrocycle

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
hetero-1-1-mer
Ligands
1 x ODB: (10~{S},14~{S},17~{R})-14-(3-carbamimidamidopropyl)-3-[[2-(hydroxymethyl)phenyl]methyl]-5,12,15-tris(oxidanylidene)-19-thia-3,6,13,16-tetrazatricyclo[19.4.0.0^{6,10}]pentacosa-1(21),22,24-triene-17-carboxamide(Non-covalent)
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
1 x NA: SODIUM ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kale, S.S. et al., Thiol-to-amine cyclization reaction enables screening of large libraries of macrocyclic compounds and the generation of sub-kilodalton ligands. Sci Adv (2019)
Release Date
2019-09-25
Peptides
Prothrombin: A
Prothrombin: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

Prothrombin

Prothrombin

Related Entries With Identical Sequence

1d3d.1 | 1eb1.1 | 1ghv.1 | 1ghw.1 | 1ghx.1 | 1ghy.1 | 1ghy.2 | 1qur.1 | 1ype.1 | 1ypg.1 | 1ypj.1 | 1ypk.1 | 1ypl.1 | 1ypm.1 | 2a0q.1 | 2a0q.2 | 2a0q.3 | 2anm.1 | 2cf8.1 | 2cf9.1 | 2cn0.1 | 2v3h.1 | 2v3o.1 | 3biu.1 | 3biv.1 | 3u69.1 | 3u8o.1 | 3u8r.1 | 4ax9.1 | 4ayv.1  more...