SMTL ID : 2bvs.1

Human thrombin complexed with fragment-based small molecules occupying the S1 pocket

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-oligomer

Ligands

1 x 2CE: N-[2-(2-CARBAMOYLMETHOXY-ETHOXY)-ETHYL]-2-[2-(4-CHLORO-PHENYLSULFANYL)-ACETYLAMINO]-3-(4-GUANIDINO-PHENYL)-PROPIONAMIDE(Non-covalent)

2CE.1: 17 residues within 4Å: Chain A: H.43, Y.47, W.50, L.96, D.199, A.200, C.201, E.202, S.205, V.225, S.226, W.227, G.228, G.230, C.231, G.238, F.239 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.50, A:V.225 Hydrogen bonds: A:H.43, A:G.228, A:G.230 Water bridges: A:S.205 Salt bridges: A:E.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neumann, T. et al., Discovery of Thrombin Inhibitor Fragments from Chemical Microarray Screening. Lett.Drug Des.Discovery (2005)

Release Date

2006-10-25

Peptides

ALPHA THROMBIN: A
HIRUDIN VARIANT-2: B
ALPHA THROMBIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
L

ALPHA THROMBIN

HIRUDIN VARIANT-2

ALPHA THROMBIN

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