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SMTL ID : 4boh.2 (1 other biounit)

Madanins (MEROPS I53) are cleaved by thrombin and factor Xa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1:

2 residues within 4Å:

Chain A: N.53, T.55

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:N.53

1 x NA: SODIUM ION(Non-functional Binders)

NA.2:

3 residues within 4Å:

Chain A: D.232, R.233, K.236

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:Y.190, A:K.236
Water bridges: A:G.238

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3:	2 residues within 4Å: Chain A: R.170, R.245 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.170 Salt bridges: A:R.170, A:R.245
SO4.4:	4 residues within 4Å: Chain A: H.87, R.89, R.98, L.246 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.87, A:R.89, A:R.98
SO4.5:	4 residues within 4Å: Chain A: D.122, R.123, F.244, K.247 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.123 Salt bridges: A:R.123, A:K.247

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Figueiredo, A.C. et al., The Tick-Derived Anticoagulant Madanin is Processed by Thrombin and Factor Xa. Plos One (2013)

Release Date

2013-09-04

Peptides

THROMBIN HEAVY CHAIN: A
THROMBIN LIGHT CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

THROMBIN HEAVY CHAIN

THROMBIN LIGHT CHAIN

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