SMTL ID : 6eo6.1

X-ray structure of the complex between human alpha-thrombin and modified 15-mer DNA aptamer containing 5-(3-(2-(1H-indol-3-yl)acetamide-N-yl)-1-propen-1-yl)-2'-deoxyuridine residue

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.69 Å
Oligo State
hetero-1-1-mer
Ligands
1 x K: POTASSIUM ION(Non-functional Binders)
1 x 0G6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide(Covalent)
1 x NA: SODIUM ION(Non-functional Binders)
1 x NAG: N-ACETYL-D-GLUCOSAMINE(Post Translational Modification)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Dolot, R. et al., Crystal structures of thrombin in complex with chemically modified thrombin DNA aptamers reveal the origins of enhanced affinity. Nucleic Acids Res. (2018)
Peptides
Prothrombin: B
Prothrombin: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
B
L
C
H

Prothrombin

Prothrombin

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1a2c.1 | 1a3b.1 | 1a3e.1 | 1a46.1 | 1a4w.1 | 1a5g.1 | 1a61.1 | 1abi.1 | 1abj.1 | 1ad8.1 | 1ae8.1 | 1afe.1 | 1aht.1 | 1ai8.1 | 1aix.1 | 1awf.1 | 1awh.1 | 1awh.2 | 1ay6.1 | 1b5g.1 | 1b7x.1 | 1ba8.1 | 1bb0.1 | 1bcu.1 | 1bmm.1 | 1bmn.1 | 1bth.1 | 1bth.2 | 1c1u.1 | 1c1v.1  more...