SMTL ID : 1c4u.1

SELECTIVE NON ELECTROPHILIC THROMBIN INHIBITORS WITH CYCLOHEXYL MOIETIES.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain B: D.232, R.233, K.236 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.232, B:R.233

1 x IH1: 2-[2-(4-BROMO-BENZENESULFONYL)-ETHYL]-1-3-DIOXO-2,3,5,8-TETRAHYDRO-1H-[1,2,4]TRIAZOLO[1,2-A]PYRIDAZINE-5-CARBOXYLIC ACID(4-CARBAMIMIDOYL-CYCLOHEXYLMETHYL)-AMIDE(Non-covalent)

IH1.2: 19 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, L.96, I.179, D.199, A.200, C.201, S.205, V.225, S.226, W.227, G.228, E.229, G.230, C.231, G.238 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:L.96, B:I.179, B:A.200, B:V.225, B:W.227 Hydrogen bonds: B:Y.47, B:D.199, B:A.200, B:S.205, B:G.228 Water bridges: B:W.227, B:Y.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krishnan, R. et al., Structure of thrombin complexed with selective non-electrophilic inhibitors having cyclohexyl moieties at P1. Acta Crystallogr.,Sect.D (2000)

Release Date

2000-09-27

Peptides

thrombin: A
thrombin: B
PROTEIN (HIRUGEN): C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

thrombin

thrombin

PROTEIN (HIRUGEN)

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