SMTL ID : 1awh.2 (1 other biounit)

NOVEL COVALENT THROMBIN INHIBITOR FROM PLANT EXTRACT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GR3: 3-ACETOXY-17-(1-FORMYL-5-METHYL-3-OXO-HEX-4-ENYL)-16-HYDROXY-4,10,13,14-TETRAMETHYL-2,3,4,5,6,9,10,11,12,13,14,15,16,17-TETRADECAHYDRO-1H-CYCLOPENTA[A]PHENANTHRENE-4-CARBOXYLIC ACID(Covalent)

GR3.1: 15 residues within 4Å: Chain B: H.43, Y.47, W.50, D.199, A.200, C.201, E.202, G.203, D.204, S.205, V.225, S.226, W.227, G.228, G.230 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.50, B:W.50, B:A.200, B:V.225, B:W.227 Hydrogen bonds: B:G.203, B:S.205 Water bridges: B:K.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weir, M.P. et al., Novel natural product 5,5-trans-lactone inhibitors of human alpha-thrombin: mechanism of action and structural studies. Biochemistry (1998)

Release Date

1998-10-28

Peptides

ALPHA THROMBIN: A
ALPHA THROMBIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

ALPHA THROMBIN

ALPHA THROMBIN

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