SMTL ID : 2hpq.1

Structures of the noncovalent complexes of human and bovine prothrombin fragment 2 with human ppack-thrombin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 0G7: D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide(Covalent)

0G7.1: 17 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, L.96, I.179, D.199, A.200, C.201, E.202, G.203, D.204, S.205, S.226, W.227, G.228, G.230 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:W.50, B:L.96, B:L.96, B:I.179, B:W.227 Hydrogen bonds: B:A.200, B:G.203, B:S.205, B:S.205, B:S.226, B:G.228, B:G.228, B:G.230 Salt bridges: B:D.199, B:E.202 pi-Stacking: B:H.43, B:Y.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arni, R.K. et al., Structures of the noncovalent complexes of human and bovine prothrombin fragment 2 with human PPACK-thrombin. Biochemistry (1993)

Release Date

1994-01-31

Peptides

ALPHA-THROMBIN (SMALL SUBUNIT): A
ALPHA-THROMBIN (LARGE SUBUNIT): B
Prothrombin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
P

ALPHA-THROMBIN (SMALL SUBUNIT)

ALPHA-THROMBIN (LARGE SUBUNIT)

Prothrombin

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