SMTL ID : 2hwl.1

Crystal structure of thrombin in complex with fibrinogen gamma' peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain B: R.233, K.236 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.236 Water bridges: B:K.236, B:G.238 NA.3: 3 residues within 4Å: Chain D: Y.190, R.233, K.236 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Y.190 Water bridges: D:Y.190

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain D: N.53 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pineda, A.O. et al., Crystal structure of thrombin in complex with fibrinogen gamma' peptide. Biophys.Chem. (2007)

Release Date

2006-09-19

Peptides

Prothrombin: AC
Prothrombin: BD
Fibrinogen gamma' peptide: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
P

Prothrombin

Prothrombin

Fibrinogen gamma' peptide

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