SMTL ID : 2bvr.1

Human thrombin complexed with fragment-based small molecules occupying the S1 pocket

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 4CP: 2-[2-(4-CHLORO-PHENYLSULFANYL)-ACETYLAMINO]-3-(4-GUANIDINO-PHENYL)-PROPIONAMIDE(Non-covalent)

4CP.1: 14 residues within 4Å: Chain A: W.50, D.192, A.193, C.194, E.195, S.198, V.218, S.219, W.220, G.221, G.223, C.224, G.231, F.232 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.50, A:A.193, A:E.195, A:V.218 Hydrogen bonds: A:G.221, A:G.223 Salt bridges: A:E.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neumann, T. et al., Discovery of Thrombin Inhibitor Fragments from Chemical Microarray Screening. Lett.Drug Des.Discovery (2005)

Release Date

2006-10-25

Peptides

ALPHA THROMBIN: A
HIRUDIN VARIANT-2: B
ALPHA THROMBIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
L

ALPHA THROMBIN

HIRUDIN VARIANT-2

ALPHA THROMBIN

Related Entries With Identical Sequence