SMTL ID : 1hdt.1

STRUCTURE OF A RETRO-BINDING PEPTIDE INHIBITOR COMPLEXED WITH HUMAN ALPHA-THROMBIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 0E7: methyl N-(4-carbamimidamidobutanoyl)-L-phenylalanyl-L-allothreonyl-L-phenylalaninate(Non-covalent)

0E7.1: 15 residues within 4Å: Chain B: H.43, Y.47, W.50, D.199, A.200, C.201, E.202, S.205, V.225, S.226, W.227, G.228, E.229, G.230, C.231 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:A.200, B:E.202, B:V.225, B:W.227, B:W.227, B:E.229 Hydrogen bonds: B:E.202, B:E.202, B:S.226, B:G.228, B:G.228, B:G.230, B:G.230 Salt bridges: B:D.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tabernero, L. et al., Structure of a retro-binding peptide inhibitor complexed with human alpha-thrombin. J.Mol.Biol. (1995)

Release Date

1995-10-15

Peptides

ALPHA-THROMBIN: A
ALPHA-THROMBIN: B
HIRUGEN PEPTIDE: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
P

ALPHA-THROMBIN

ALPHA-THROMBIN

HIRUGEN PEPTIDE

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