SMTL ID : 9c50.1 (1 other biounit)

Replacement of a single residue changes the primary specificity of thrombin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PHE- PRO- PCS: FPF(Non-covalent)

PHE-PRO-PCS.1: 17 residues within 4Å: Chain B: H.43, Y.47, W.50, N.95, L.96, I.179, A.200, C.201, E.202, G.203, D.204, S.205, S.226, W.227, G.228, G.230, C.231 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:L.96, B:I.179, B:E.202, B:W.227, B:W.227 Hydrogen bonds: B:G.203, B:S.205, B:S.205, B:S.226, B:G.228

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain B: R.233, K.236 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.236, B:K.236 Water bridges: B:G.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rossi, A.D. et al., Replacement of a single residue changes the primary specificity of thrombin. J.Thromb.Haemost. (2025)

Release Date

2025-01-22

Peptides

Thrombin A-chain: A
Thrombin B-chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thrombin A-chain

Thrombin B-chain

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