SMTL ID : 3c27.1

Cyanofluorophenylacetamides as Orally Efficacious Thrombin Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x DKK: N-[2-(carbamimidamidooxy)ethyl]-2-{6-cyano-3-[(2,2-difluoro-2-pyridin-2-ylethyl)amino]-2-fluorophenyl}acetamide(Non-covalent)

DKK.1: 19 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, L.96, I.179, D.199, A.200, C.201, S.205, V.225, S.226, W.227, G.228, E.229, G.230, C.231, G.238 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:W.50, B:L.96, B:I.179, B:W.227, B:W.227 Hydrogen bonds: B:S.226, B:G.228, B:G.230 Water bridges: B:S.226, B:W.227, B:G.228, B:G.228, B:D.232 Salt bridges: B:D.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kreuter, K.D. et al., Cyanofluorophenylacetamides as Orally Efficacious Thrombin Inhibitors. To be Published

Release Date

2009-02-17

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Hirudin-3A: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

Thrombin light chain

Thrombin heavy chain

Hirudin-3A

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