SMTL ID : 1a3e.1

COMPLEX OF HUMAN ALPHA-THROMBIN WITH THE BIFUNCTIONAL BORONATE INHIBITOR BOROLOG2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x T16: BOROLOG2(Covalent)

T16.1: 16 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, L.96, A.200, C.201, E.202, G.203, D.204, S.205, V.225, S.226, W.227, G.228, G.230 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:L.96, B:L.96, B:W.227 Hydrogen bonds: B:E.202, B:E.202, B:G.203, B:D.204, B:S.205, B:S.226, B:G.228 Water bridges: B:E.202, B:E.202 Halogen bonds: B:G.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skordalakes, E. et al., Bifunctional peptide boronate inhibitors of thrombin: crystallographic analysis of inhibition enhanced by linkage to an exosite 1 binding peptide. Biochemistry (1998)

Release Date

1998-06-03

Peptides

ALPHA-THROMBIN (SMALL SUBUNIT): A
ALPHA-THROMBIN (LARGE SUBUNIT): B
Hirudin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

ALPHA-THROMBIN (SMALL SUBUNIT)

ALPHA-THROMBIN (LARGE SUBUNIT)

Hirudin

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