SMTL ID : 1ba8.1

THROMBIN INHIBITOR WITH A RIGID TRIPEPTIDYL ALDEHYDES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 0IT: amino({(4S)-4-[({(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}acetyl)amino]-5-oxopentyl}amino)methaniminium(Covalent)

0IT.1: 21 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, L.96, I.179, D.199, A.200, C.201, E.202, G.203, D.204, S.205, S.226, W.227, G.228, E.229, G.230, C.231, G.238 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:W.50, B:L.96, B:I.179, B:W.227, B:W.227 Hydrogen bonds: B:A.200, B:G.203, B:D.204, B:S.205, B:S.226, B:G.228, B:G.228, B:G.230 Water bridges: B:D.199, B:W.227, B:G.230, B:G.230, B:Y.240 Salt bridges: B:D.199

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain B: L.46, N.53, T.55 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krishnan, R. et al., Highly selective mechanism-based thrombin inhibitors: structures of thrombin and trypsin inhibited with rigid peptidyl aldehydes. Biochemistry (1998)

Release Date

1999-04-27

Peptides

THROMBIN: A
THROMBIN: B
HIRUGEN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

THROMBIN

THROMBIN

HIRUGEN

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