SMTL ID : 1c4v.1

SELECTIVE NON ELECTROPHILIC THROMBIN INHIBITORS WITH CYCLOHEXYL MOIETIES.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain B: R.197, D.232, R.233, D.234, K.236 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.197, B:D.234

1 x IH2: 2-(2,2-DIPHENYL-ETHYL)-7-METHYL-1,3-DIOXO-2,3,5,8-TETRAHYDRO-1H-[1,2,4]TRIAZOLO [1,2-A]PYRIDAZINE-5-CARBOXYLIC ACID(4-CARBAMIMIDOYL-CYCLOHEXYLMETHYL)-AMIDE(Non-covalent)

IH2.2: 19 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, L.96, I.179, D.199, A.200, C.201, S.205, V.225, S.226, W.227, G.228, E.229, G.230, C.231, G.238 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:H.43, B:Y.47, B:W.50, B:W.50, B:I.179, B:I.179, B:A.200, B:V.225, B:W.227, B:W.227, B:E.229 Hydrogen bonds: B:D.199, B:D.199, B:A.200, B:S.226, B:G.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krishnan, R. et al., Structure of thrombin complexed with selective non-electrophilic inhibitors having cyclohexyl moieties at P1. Acta Crystallogr.,Sect.D (2000)

Release Date

2000-09-27

Peptides

THROMBIN:SHORT CHAIN: A
THROMBIN:LONG CHAIN: B
HIRUGEN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

THROMBIN:SHORT CHAIN

THROMBIN:LONG CHAIN

HIRUGEN

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