SMTL ID : 1hao.1

COMPLEX OF HUMAN ALPHA-THROMBIN WITH A 15MER OLIGONUCLEOTIDE GGTTGGTGTGGTTGG (BASED ON NMR MODEL OF DNA)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-oligomer

Ligands

1 x 0G6: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE(Covalent)

0G6.1: 15 residues within 4Å: Chain C: H.43, Y.47, W.50, L.96, D.199, A.200, C.201, G.203, D.204, S.205, S.226, W.227, G.228, G.230, G.238 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:H.43, C:Y.47, C:W.50, C:L.96, C:W.227 Hydrogen bonds: C:A.200, C:G.203, C:D.204, C:S.205, C:S.226, C:W.227, C:G.228, C:G.228, C:G.230 Water bridges: C:G.238 Salt bridges: C:D.199 pi-Stacking: C:H.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Padmanabhan, K. et al., An ambiguous structure of a DNA 15-mer thrombin complex. Acta Crystallogr.,Sect.D (1996)

Release Date

1996-04-03

Peptides

ALPHA-THROMBIN light chain: B
ALPHA-THROMBIN heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
L

C
H

ALPHA-THROMBIN light chain

ALPHA-THROMBIN heavy chain

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