SMTL ID : 1nrr.1

Crystallographic structures of Thrombin complexed with Thrombin receptor peptides: Existence of expected and novel binding modes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 0G6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide(Covalent)

0G6.1: 20 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, L.96, I.179, D.199, A.200, C.201, E.202, G.203, D.204, S.205, S.226, W.227, G.228, G.230, C.231, G.238 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:I.179, B:W.227 Hydrogen bonds: B:A.200, B:G.203, B:D.204, B:S.205, B:S.205, B:S.226, B:G.228, B:G.228, B:G.230 Water bridges: B:E.202, B:E.202, B:W.227, B:G.230, B:G.230, B:Y.240 Salt bridges: B:D.199 pi-Stacking: B:H.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mathews, I.I. et al., Crystallographic structures of thrombin complexed with thrombin receptor peptides: existence of expected and novel binding modes. Biochemistry (1994)

Release Date

1994-05-31

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Proteinase-activated receptor 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
R

Thrombin light chain

Thrombin heavy chain

Proteinase-activated receptor 1

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