SMTL ID : 3d49.1

Thrombin Inhibition

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain B: R.233, K.236 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.233, B:K.236 Water bridges: B:G.235, B:G.238 NA.2: 2 residues within 4Å: Chain B: K.174, T.177 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.174

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.3: 3 residues within 4Å: Chain B: S.176, E.229, G.235 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baum, B. et al., Understanding Thrombin Inhibition. To be Published

Release Date

2009-04-14

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Hirudin variant-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Thrombin light chain

Thrombin heavy chain

Hirudin variant-1

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