SMTL ID : 5do4.1

Thrombin-RNA aptamer complex

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.86 Å
Oligo State
hetero-oligomer
Ligands
1 x 0G6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide(Covalent)
1 x NAG: N-ACETYL-D-GLUCOSAMINE(Post Translational Modification)
4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
2 x GOL: GLYCEROL(Non-functional Binders)
1 x CA: CALCIUM ION(Non-covalent)
1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
1 x MG: MAGNESIUM ION(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Abeydeera, N.D. et al., Evoking picomolar binding in RNA by a single phosphorodithioate linkage. Nucleic Acids Res. (2016)
Release Date
2016-09-14
Peptides
Thrombin light chain: A
Thrombin heavy chain: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
L
B
H

Thrombin light chain

Thrombin heavy chain

Related Entries With Identical Sequence

1a2c.1 | 1a3b.1 | 1a3e.1 | 1a46.1 | 1a4w.1 | 1a5g.1 | 1a61.1 | 1abi.1 | 1abj.1 | 1ad8.1 | 1ae8.1 | 1afe.1 | 1aht.1 | 1ai8.1 | 1aix.1 | 1awf.1 | 1awh.1 | 1awh.2 | 1ay6.1 | 1b5g.1 | 1b7x.1 | 1ba8.1 | 1bb0.1 | 1bcu.1 | 1bmm.1 | 1bmn.1 | 1bth.1 | 1bth.2 | 1c1u.1 | 1c1v.1  more...