SMTL ID : 1a2c.1

Structure of thrombin inhibited by AERUGINOSIN298-A from a BLUE-GREEN ALGA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 34H- LEU- PRJ- OAR: Aeruginosin 298-A(Non-covalent)

34H-LEU-PRJ-OAR.1: 18 residues within 4Å: Chain B: H.43, Y.47, W.50, L.96, I.179, D.199, A.200, C.201, E.202, S.205, S.226, W.227, G.228, E.229, G.230, C.231, R.233, G.238 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:Y.47, B:Y.47, B:L.96, B:I.179, B:E.229 Hydrogen bonds: B:Y.47, B:W.50, B:A.200, B:S.205, B:S.226, B:G.228, B:G.228, B:G.230, B:G.230 Water bridges: B:E.202, B:E.202, B:W.227, B:F.239 Salt bridges: B:D.199

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain B: R.233, K.236 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.233, B:K.236 Water bridges: B:G.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steiner, J.L.R. et al., Structure of Thrombin Inhibited by Aeruginosin 298-A from a Blue-Green Alga. J.Am.Chem.Soc. (1998)

Release Date

1998-07-01

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Hirudin variant-2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Thrombin light chain

Thrombin heavy chain

Hirudin variant-2

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