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SMTL ID : 1a61.1

THROMBIN COMPLEXED WITH A BETA-MIMETIC THIAZOLE-CONTAINING INHIBITOR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-oligomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1:	2 residues within 4Å: Chain B: R.233, K.236 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.236, B:K.236 Water bridges: B:Y.190, B:D.232, B:G.235
NA.2:	2 residues within 4Å: Chain B: K.174, T.177 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.174 Water bridges: B:K.174

1 x 00N: (1S,7S)-7-AMINO-7-BENZYL-N-{(1S)-4-CARBAMIMIDAMIDO-1-[(S)-HYDROXY(1,3-THIAZOL-2-YL)METHYL]BUTYL}-8-OXOHEXAHYDRO-1H-PYRAZOLO[1,2-A]PYRIDAZINE-1-CARBOXAMIDE(Covalent)

00N.3:

21 residues within 4Å:

Chain B: H.43, Y.47, W.50, K.52, E.94, N.95, L.96, D.199, A.200, C.201, E.202, G.203, D.204, S.205, V.225, S.226, W.227, G.228, G.230, C.231, G.238

19 PLIP interactions:

19 interactions with chain B

Hydrophobic interactions: B:W.50, B:L.96, B:V.225, B:W.227
Hydrogen bonds: B:A.200, B:C.201, B:E.202, B:G.203, B:S.205, B:S.226, B:W.227, B:G.228, B:G.228, B:G.230
Water bridges: B:G.230, B:G.230, B:G.238, B:F.239
Salt bridges: B:D.199

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

St Charles, R. et al., Bound structures of novel P3-P1' beta-strand mimetic inhibitors of thrombin. J.Med.Chem. (1999)

Release Date

1998-06-17

Peptides

ALPHA-THROMBIN (SMALL SUBUNIT): A
ALPHA-THROMBIN (LARGE SUBUNIT): B
HIRUGEN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

ALPHA-THROMBIN (SMALL SUBUNIT)

ALPHA-THROMBIN (LARGE SUBUNIT)

HIRUGEN

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