SMTL ID : 1fpc.1

ACTIVE SITE MIMETIC INHIBITION OF THROMBIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 0ZI: amino{[(4S)-4-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)-5-(4-ethylpiperidin-1-yl)-5-oxopentyl]amino}methaniminium(Non-covalent)

0ZI.1: 15 residues within 4Å: Chain B: H.43, Y.47, W.50, K.52, E.94, L.96, D.199, A.200, C.201, E.202, V.225, W.227, G.228, G.230, C.231 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:W.50, B:L.96, B:W.227 Hydrogen bonds: B:G.228, B:G.228, B:G.230, B:G.230 Water bridges: B:F.239, B:F.239 Salt bridges: B:D.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mathews, I.I. et al., Active-site mimetic inhibition of thrombin. Acta Crystallogr.,Sect.D (1995)

Release Date

1995-02-27

Peptides

thrombin: A
thrombin: B
Hirudin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

thrombin

thrombin

Hirudin

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